TCONS_00045127 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045127
Unique NameTCONS_00045127
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045127 ID=TCONS_00045127|Name=TCONS_00045127|organism=Clytia hemisphaerica|type=transcript|length=599bp
tttattttcagattgTGCAGAATGGCAATCTAGATTTAAGATTTTCCAGG
TTCAACACGGACAAGATGCTTTCATGAAGTGCAAAGTCACTGGAACATTT
GATGGTTTTTACGATAGCAGTGGTCAGCTAATCAAGGACAATGATAAATT
TAAAGTGATCAACCCAACAGATGGTTCAGATATTTACACTCTTGATGTCA
TCGCTGTTGAGGAATCTGATTATGGCGATCTGATTTGTAGAGACACTACA
TCAGATGATACGGCTACCCTGGAAATTGATATTTCAATTGAACCAATCAA
GGATGCAAATTTGGCCATCGGTTTTGAAGGTGTAATCAAGGCTGAGGTCT
TTGGCATGCCTCGAAAACAAATGGAATGGAAGAAAGGGACAAAGAAAGTT
GCAATCATGGACAACTCTGGGAAGATTATTCTTAATGAACAGAACCGCTA
TTCCATTGATCCGAGAGGTTCTTTGATCATCAAAGAAGTAGTTGCAGAAG
ACAAGGGAGACTACACTTTCACTGTTGTCAAAGATTTTTCCAGAGATAAT
AAACCTGTTATGGTTGATACTGGAAGTAAGCTTTTTTCAATTATTAAAA
Run BLAST on NCBI

protein sequence of TCONS_00045127-protein

>TCONS_00045127-protein ID=TCONS_00045127-protein|Name=TCONS_00045127-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
LFSDCAEWQSRFKIFQVQHGQDAFMKCKVTGTFDGFYDSSGQLIKDNDKF
KVINPTDGSDIYTLDVIAVEESDYGDLICRDTTSDDTATLEIDISIEPIK
DANLAIGFEGVIKAEVFGMPRKQMEWKKGTKKVAIMDNSGKIILNEQNRY
SIDPRGSLIIKEVVAEDKGDYTFTVVKDFSRDNKPVMVDTGSKLFSIIK
Run BLAST on NCBI

transcript from alignment at sc0007009:127..1054+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045127 ID=TCONS_00045127|Name=TCONS_00045127|organism=Clytia hemisphaerica|type=transcript|length=928bp|location=Sequence derived from alignment at sc0007009:127..1054+ (Clytia hemisphaerica)
tttattttcagattgTGCAGAATGGCAATCTAGATTTAAGATTTTCCAGG
TTCAACACGGACAAGATGCTTTCATGAAGTGCAAAGTCACTGGAACATTT
GATGGTTTTTACGATAGCAGTGGTCAGCTAATCAAGGACAATGATAAATT
TAAAGTGATCAACCCAACAGATGGTTCAGATATTTACACTCTTGATGTCA
TCGCTGTTGAGGAATCTGATTATGGCGATCTGATTTGTAGAGACACTACA
TCAGATGATACGGCTACCCTGGAAATTGATAGTAAGATCTGCTAAAAATA
TTGTGCTTTAGGCCATTACAAATTAATAATACTATAATACTAATACTTTA
TTATTTATGAAAAAACTCTGGTCataaaacaataaatttatttGTCTTAG
CTAATCACCTGATGTATACAATCAactgaaaatagaaatattatgaaatt
ttgcatcaTCTAAAGAAGAAAAAGCCCAAGAATTATATAATCATATACAT
AAcccttgttaattttttaaaatcatgGGAGTTAACTACTTCATGGAGCC
AAATCAACCATAAGCTTTATCAGAAATTCCtcattaaattttgattatGT
TTTTCTCCAGTTTCAATTGAACCAATCAAGGATGCAAATTTGGCCATCGG
TTTTGAAGGTGTAATCAAGGCTGAGGTCTTTGGCATGCCTCGAAAACAAA
TGGAATGGAAGAAAGGGACAAAGAAAGTTGCAATCATGGACAACTCTGGG
AAGATTATTCTTAATGAACAGAACCGCTATTCCATTGATCCGAGAGGTTC
TTTGATCATCAAAGAAGTAGTTGCAGAAGACAAGGGAGACTACACTTTCA
CTGTTGTCAAAGATTTTTCCAGAGATAATAAACCTGTTATGGTTGATACT
GGAAGTAAGCTTTTTTCAATTATTAAAA

Coding sequence (CDS) from alignment at sc0007009:127..1054+

>TCONS_00045127 ID=TCONS_00045127|Name=TCONS_00045127|organism=Clytia hemisphaerica|type=CDS|length=1194bp|location=Sequence derived from alignment at sc0007009:127..1054+ (Clytia hemisphaerica)
ttattttcagattgTGCAGAATGGCAATCTAGATTTAAGATTTTCCAGGT
TCAACACGGACAAGATGCTTTCATGAAGTGCAAAGTCACTGGAACATTTG
ATGGTTTTTACGATAGCAGTGGTCAGCTAATCAAGGACAATGATAAATTT
AAAGTGATCAACCCAACAGATGGTTCAGATATTTACACTCTTGATGTCAT
CGCTGTTGAGGAATCTGATTATGGCGATCTGATTTGTAGAGACACTACAT
CAGATGATACGGCTACCCTGGAAATTGATATTTCAATTGAACCAATCAAG
GATGCAAATTTGGCCATCGGTTTTGAAGGTGTAATCAAGGCTGAGGTCTT
TGGCATGCCTCGAAAACAAATGGAATGGAAGAAAGGGACAAAGAAAGTTG
CAATCATGGACAACTCTGGGAAGATTATTCTTAATGAACAGAACCGCTAT
TCCATTGATCCGAGAGGTTCTTTGATCATCAAAGAAGTAGTTGCAGAAGA
CAAGGGAGACTACACTTTCACTGTTGTCAAAGATTTTTCCAGAGATAATA
AACCTGTTATGGTTGATACTGGAAGTAAGCTTTTTTCAATTATTAAAtta
ttttcagattgTGCAGAATGGCAATCTAGATTTAAGATTTTCCAGGTTCA
ACACGGACAAGATGCTTTCATGAAGTGCAAAGTCACTGGAACATTTGATG
GTTTTTACGATAGCAGTGGTCAGCTAATCAAGGACAATGATAAATTTAAA
GTGATCAACCCAACAGATGGTTCAGATATTTACACTCTTGATGTCATCGC
TGTTGAGGAATCTGATTATGGCGATCTGATTTGTAGAGACACTACATCAG
ATGATACGGCTACCCTGGAAATTGATATTTCAATTGAACCAATCAAGGAT
GCAAATTTGGCCATCGGTTTTGAAGGTGTAATCAAGGCTGAGGTCTTTGG
CATGCCTCGAAAACAAATGGAATGGAAGAAAGGGACAAAGAAAGTTGCAA
TCATGGACAACTCTGGGAAGATTATTCTTAATGAACAGAACCGCTATTCC
ATTGATCCGAGAGGTTCTTTGATCATCAAAGAAGTAGTTGCAGAAGACAA
GGGAGACTACACTTTCACTGTTGTCAAAGATTTTTCCAGAGATAATAAAC
CTGTTATGGTTGATACTGGAAGTAAGCTTTTTTCAATTATTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028710XLOC_028710Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045127-proteinTCONS_00045127-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045127-exon-sc0007009-1491911889:127..407TCONS_00045127-exon-sc0007009-1491911889:127..407Clytia hemisphaericaexon
TCONS_00045127-exon-sc0007009-1510915933:127..407TCONS_00045127-exon-sc0007009-1510915933:127..407Clytia hemisphaericaexon
TCONS_00045127-exon-sc0007009-1575043694:127..407TCONS_00045127-exon-sc0007009-1575043694:127..407Clytia hemisphaericaexon
TCONS_00045127-exon-sc0007009-1491911889:737..1054TCONS_00045127-exon-sc0007009-1491911889:737..1054Clytia hemisphaericaexon
TCONS_00045127-exon-sc0007009-1510915933:737..1054TCONS_00045127-exon-sc0007009-1510915933:737..1054Clytia hemisphaericaexon
TCONS_00045127-exon-sc0007009-1575043694:737..1054TCONS_00045127-exon-sc0007009-1575043694:737..1054Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007009supercontigsc0007009:127..1054 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.72906	3.0161	2.05999	3.2246	80.1076	57.6795	79.4121	81.0236	43.5414	53.3634	31.7042	32.7762	41.9872	37.5096	25.5692	26.6636	46.0956	45.4966	38.1004	53.5302	35.0055	33.5912	17.9401	26.9307	99.134	90.3924	67.8564	54.1805	17.1646	16.4593
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR013098Ig_I-set
IPR007110Ig-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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