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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045099 ID=TCONS_00045099|Name=TCONS_00045099|organism=Clytia hemisphaerica|type=transcript|length=1267bp
gagagcgtcaactgtatgttAAATGTCTTCTCTTCCTTTACTTGCAGGAT
TATTATCGGCGTTTTTCGAGGAGTTTTATGACGCAGACCTAATATCGGAA
GAGACATTTGACAGTTGGCAAATTAGTAAAGAATTGCCTGATGGAAAAGG
GGTAGCATTAAGTGAAGTGAAGGATTTCTTGCATTGGTTGAAAAAAGCTG
AAGAGGAGCAGAATGATGAAGAATCTGCTGCTCCCGTAACGAACTGATCA
TTTTCTGGAGATaacatttgtttgttttgtgCTTTTGACTACTTGGACGT
CTAGGAAAGTTTtacaagaaattattttcaCATGCTTttatttgaacaaa
aaaattctttaataaatttaatatttttattgaatattgtGTAGTTAGGA
ATTGATCATTAATGGCTGTTTGCTGTTTGCTATTCTACCGTTTCTCCGTT
GGTCTACCAACACGAAGTTTTCCTGTCCATTTGGAAATGATTTATGATGA
TGATACTTCAAGGTGTCATAGACAAACCCTTtgcaattttttctattgta
aatACAGTATTAATTATTATGAGATTTCAGCCAGTTGTCCAGTACCTTTC
TTCTTTTCGACGAATCGGACATATCGTATCTTTTCTGTgcctttttgttt
atttgtttatttttttgtgcTCGTGTTTTTCCTTGTCAGAATTTTGCTCC
TTTTTTGTTCGTTTTCTTGTTCCGTTTACAATAGcttacaaaaaagattt
cagttttttaaatttatttttcgcatgcaaaattttttagaaaagtttAA
ATTAATTTGATAAACTATCATCAGTAGTGAAGGTCTTAGAAAAGTTCCGA
ATTATCGCAATGCTCCTTGCAAAATGAGTTTAATTTAGTCGTCTTGCTCA
TAGTTGCAGACCTATCATTCATGCCTTTGAATAGTCAGACTACATAAcat
attttatttaaatataGGTTTCTTTTCATGAGAACCATAGTATATTTATG
GTATCATTATTATCATTTTTGCTCATGAAAACAACCAACGggatattgta
tttttataatattttcatcTCGATGAACGATTCACAAAAATCACGTATTT
GCTGCGTGCTGTTGCGGCCCCATACGGTTAATCTATCTATGCGTGAATAC
ATAATGCAGTACCATTTACACTTGATTCTGTTACTATttttatttcttga
ttttccgtatatttcaCTCTTAAAAACTACCGTTTATACAGACAAAATCA
GATCCTTACCGTGCAGA Run BLAST on NCBI protein sequence of TCONS_00045099-protein >TCONS_00045099-protein ID=TCONS_00045099-protein|Name=TCONS_00045099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MAVCCLLFYRFSVGLPTRSFPVHLEMIYDDDTSRCHRQTLCNFFYCKYSI
NYYEISASCPVPFFFSTNRTYRIFSVPFCLFVYFFVLVFFLVRILLLFCS
FSCSVYNSLQKRFQFFKFIFRMQNFLEKFKLI Run BLAST on NCBI transcript from alignment at sc0006905:67..1333 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045099 ID=TCONS_00045099|Name=TCONS_00045099|organism=Clytia hemisphaerica|type=transcript|length=1267bp|location=Sequence derived from alignment at sc0006905:67..1333 (Clytia hemisphaerica)
TCTGCACGGTAAGGATCTGATTTTGTCTGTATAAACGGTAGTTTTTAAGA
GtgaaatatacggaaaatcaagaaataaaaATAGTAACAGAATCAAGTGT
AAATGGTACTGCATTATGTATTCACGCATAGATAGATTAACCGTATGGGG
CCGCAACAGCACGCAGCAAATACGTGATTTTTGTGAATCGTTCATCGAga
tgaaaatattataaaaatacaatatccCGTTGGTTGTTTTCATGAGCAAA
AATGATAATAATGATACCATAAATATACTATGGTTCTCATGAAAAGAAAC
CtatatttaaataaaatatgTTATGTAGTCTGACTATTCAAAGGCATGAA
TGATAGGTCTGCAACTATGAGCAAGACGACTAAATTAAACTCATTTTGCA
AGGAGCATTGCGATAATTCGGAACTTTTCTAAGACCTTCACTACTGATGA
TAGTTTATCAAATTAATTTaaacttttctaaaaaattttgcatgcgaaaa
ataaatttaaaaaactgaaatcttttttgtaagCTATTGTAAACGGAACA
AGAAAACGAACAAAAAAGGAGCAAAATTCTGACAAGGAAAAACACGAgca
caaaaaaataaacaaataaacaaaaaggcACAGAAAAGATACGATATGTC
CGATTCGTCGAAAAGAAGAAAGGTACTGGACAACTGGCTGAAATCTCATA
ATAATTAATACTGTatttacaatagaaaaaattgcaAAGGGTTTGTCTAT
GACACCTTGAAGTATCATCATCATAAATCATTTCCAAATGGACAGGAAAA
CTTCGTGTTGGTAGACCAACGGAGAAACGGTAGAATAGCAAACAGCAAAC
AGCCATTAATGATCAATTCCTAACTACacaatattcaataaaaatattaa
atttattaaagaatttttttgttcaaataaAAGCATGtgaaaataatttc
ttgtaAAACTTTCCTAGACGTCCAAGTAGTCAAAAGcacaaaacaaacaa
atgttATCTCCAGAAAATGATCAGTTCGTTACGGGAGCAGCAGATTCTTC
ATCATTCTGCTCCTCTTCAGCTTTTTTCAACCAATGCAAGAAATCCTTCA
CTTCACTTAATGCTACCCCTTTTCCATCAGGCAATTCTTTACTAATTTGC
CAACTGTCAAATGTCTCTTCCGATATTAGGTCTGCGTCATAAAACTCCTC
GAAAAACGCCGATAATAATCCTGCAAGTAAAGGAAGAGAAGACATTTaac
atacagttgacgctctc Coding sequence (CDS) from alignment at sc0006905:67..1333 >TCONS_00045099 ID=TCONS_00045099|Name=TCONS_00045099|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at sc0006905:67..1333 (Clytia hemisphaerica)
TCAAATTAATTTaaacttttctaaaaaattttgcatgcgaaaaataaatt
taaaaaactgaaatcttttttgtaagCTATTGTAAACGGAACAAGAAAAC
GAACAAAAAAGGAGCAAAATTCTGACAAGGAAAAACACGAgcacaaaaaa
ataaacaaataaacaaaaaggcACAGAAAAGATACGATATGTCCGATTCG
TCGAAAAGAAGAAAGGTACTGGACAACTGGCTGAAATCTCATAATAATTA
ATACTGTatttacaatagaaaaaattgcaAAGGGTTTGTCTATGACACCT
TGAAGTATCATCATCATAAATCATTTCCAAATGGACAGGAAAACTTCGTG
TTGGTAGACCAACGGAGAAACGGTAGAATAGCAAACAGCAAACAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045099-exon-sc0006905-1491911889:67..1333 | TCONS_00045099-exon-sc0006905-1491911889:67..1333 | Clytia hemisphaerica | exon |
| TCONS_00045099-exon-sc0006905-1510915933:67..1333 | TCONS_00045099-exon-sc0006905-1510915933:67..1333 | Clytia hemisphaerica | exon |
| TCONS_00045099-exon-sc0006905-1575043694:67..1333 | TCONS_00045099-exon-sc0006905-1575043694:67..1333 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006905 | supercontig | sc0006905:67..1333 . |
Blast
The following BLAST results are available for this feature:
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