TCONS_00045082 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045082
Unique NameTCONS_00045082
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length398

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045082 ID=TCONS_00045082|Name=TCONS_00045082|organism=Clytia hemisphaerica|type=transcript|length=398bp
CTAAAGATGCCAGCATCACCAATAAAGAGAACATTCCAACTGAACGTCTG
AAGTCTAATAATCAACAATCGAAATTGACTCAACCAATAAAATCAAAAGC
AAATTCGAAACTTTTGCAACCTAAGTTTGGTTCGAAAGCAAGACCTTCGT
CACAACCCGAATCAAGTTCGGGACTCACGAAACTTCCTGTCTCCAAAGTT
CGCAGAGGAACAGGCCCGTCATCGTCCACAGATTCCTCTGAGGTAAGATC
ACTGTCCtttataccctggacaaagtttCTCAACCCCGGCTaagcaaagt
ttttgttttgatcgtagcttttttgaaaattggtaccctaatggtggcAA
TACTCAATATCTGtataaatgcatcgagagcgctaacTACTTTTCCTC
Run BLAST on NCBI

transcript from alignment at sc0006860:986..1383

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045082 ID=TCONS_00045082|Name=TCONS_00045082|organism=Clytia hemisphaerica|type=transcript|length=398bp|location=Sequence derived from alignment at sc0006860:986..1383 (Clytia hemisphaerica)
GAGGAAAAGTAgttagcgctctcgatgcatttataCAGATATTGAGTATT
gccaccattagggtaccaattttcaaaaaagctacgatcaaaacaaaaac
tttgcttAGCCGGGGTTGAGaaactttgtccagggtataaaGGACAGTGA
TCTTACCTCAGAGGAATCTGTGGACGATGACGGGCCTGTTCCTCTGCGAA
CTTTGGAGACAGGAAGTTTCGTGAGTCCCGAACTTGATTCGGGTTGTGAC
GAAGGTCTTGCTTTCGAACCAAACTTAGGTTGCAAAAGTTTCGAATTTGC
TTTTGATTTTATTGGTTGAGTCAATTTCGATTGTTGATTATTAGACTTCA
GACGTTCAGTTGGAATGTTCTCTTTATTGGTGATGCTGGCATCTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028665XLOC_028665Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045082-exon-sc0006860-1491911889:986..1383TCONS_00045082-exon-sc0006860-1491911889:986..1383Clytia hemisphaericaexon
TCONS_00045082-exon-sc0006860-1510915933:986..1383TCONS_00045082-exon-sc0006860-1510915933:986..1383Clytia hemisphaericaexon
TCONS_00045082-exon-sc0006860-1575043694:986..1383TCONS_00045082-exon-sc0006860-1575043694:986..1383Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006860supercontigsc0006860:986..1383 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.01412	5.71281	4.65768	4.32204	6.83482	4.8486	3.37868	5.04112	3.93379	6.82412	4.72225	3.68936	1.76959	1.2965	2.3231	1.17232	4.6197	3.21632	0	0.208807	1.47393	0.411849	3.77117	3.44913	7.00599	6.60064	0.257392	0.620129	1.98356	4.83243
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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