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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045072 ID=TCONS_00045072|Name=TCONS_00045072|organism=Clytia hemisphaerica|type=transcript|length=1239bp
atcaaaatggtagaaaaaAGAGAGAAGGGCGATACACTACTGCGGGTGTT
GATTCTTTGCTTTCGATTGATGGGCATGACAAGTTGATGGGTTACCAAAA
CTCAACGTTTCCCATTGCAGTGTATGGAATGCTAGACCAGGCTAGTAGGA
AAATACTAATCCTCAGATGTTGGACGACCAATAGCAATCCTGACGTTGTC
GGCCATTGGTACCTGGAATTGTTAAAGGAATCAAAAATATTGCCTGGTAG
TATGAGATGTGACCGTGGCACAGAAACTGGCAAATTGGTAACAATTCATG
GTTATCTAAGAGCTCAAGTTGGAGCTCTCACTGACCCTGTTGATTCAATC
ATATATGGCACTTCAACCACTAACCAGGTACTAGGGCTTGCCTAAgcctg
tacacgtttttttataggcTTCAAAGAAtaggtcaaaaaattaagaacat
gctaagaacatttagAGGCTTCAAGAGTAAGAAAGAAGaacatttgtttg
tttttgattatgtacacatgtttcaataaaaagtaaaaaggcTCTTAATC
CAGCTGACTTAATAAGTGAGGAAAATCACATTTCACGCCAATTAAGTCCC
CCATGAGCAAACTTTTGAGACTTAAATTAATAGACTTAATTactgtaaga
acattttaaggcttgaaaccaaaaaagctaagaacattgaaGGCTTCTTc
gattttgaatgttcttataaaaaaaatgtgtatgtgGTAGAtcaggcagt
tagtcacactaggaaatcaagctttcagaaaaaacaacatcagtcatcta
caggatgtatttgcaacaacaaggatgagaattacctgaatcaagttcaa
gatcccaaaACAATCAatttaaacttgaaaacttaaaatgagacaaaatg
acagattgcgaattagatgagggatgtcgacattagacaaaCTTACGGTA
GAGTGTGGACAtgaaatttaatctttttttatgAAGTTAACATGACTGTC
AGCAGAGGTTGCATAGTTTGAACCCATAGTTTTTTCTTAAGGGGTGGGNT
CGCAAATTTTCCAGAGGAAGGGGGAATCAGTCAAAAAAGGGGGTAACCTT
Atcgaaaaacttttcttttttttaagttgaacttaggataaaaaagaatt
ttgacacTATTAATATGTTTCCAGATTGAGAGGTGGTGGCGCGAACTTCA
TGAACGCTTGGAGAAAAACATCAAGAAGGACCTCAATGC Run BLAST on NCBI protein sequence of TCONS_00045072-protein >TCONS_00045072-protein ID=TCONS_00045072-protein|Name=TCONS_00045072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
QNGRKKREGRYTTAGVDSLLSIDGHDKLMGYQNSTFPIAVYGMLDQASRK
ILILRCWTTNSNPDVVGHWYLELLKESKILPGSMRCDRGTETGKLVTIHG
YLRAQVGALTDPVDSIIYGTSTTNQVLGLA Run BLAST on NCBI transcript from alignment at sc0006828:16..1413+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045072 ID=TCONS_00045072|Name=TCONS_00045072|organism=Clytia hemisphaerica|type=transcript|length=1398bp|location=Sequence derived from alignment at sc0006828:16..1413+ (Clytia hemisphaerica)
atcaaaatggtagaaaaaAGAGAGAAGGGCGATACACTACTGCGGGTGTT
GATTCTTTGCTTTCGATTGATGGGCATGACAAGTTGATGGGTTACCAAAA
CTCAACGTTTCCCATTGCAGTGTATGGAATGCTAGACCAGGCTAGTAGGA
AAATACTAATCCTCAGATGTTGGACGACCAATAGCAATCCTGACGTTGTC
GGCCATTGGTACCTGGAATTGTTAAAGGAATCAAAAATATTGCCTGGTAG
TATGAGATGTGACCGTGGCACAGAAACTGGCAAATTGGTAACAATTCATG
GTTATCTAAGAGCTCAAGTTGGAGCTCTCACTGACCCTGTTGATTCAATC
ATATATGGCACTTCAACCACTAACCAGGTACTAGGGCTTGCCTAAgcctg
tacacgtttttttataggcTTCAAAGAAtaggtcaaaaaattaagaacat
gctaagaacatttagAGGCTTCAAGAGTAAGAAAGAAGaacatttgtttg
tttttgattatgtacacatgtttcaataaaaagtaaaaaggcTCTTAATC
CAGCTGACTTAATAAGTGAGGAAAATCACATTTCACGCCAATTAAGTCCC
CCATGAGCAAACTTTTGAGACTTAAATTAATAGACTTAATTactgtaaga
acattttaaggcttgaaaccaaaaaagctaagaacattgaaGGCTTCTTc
gattttgaatgttcttataaaaaaaatgtgtatgtgGTAGAtcaggcagt
tagtcacactaggaaatcaagctttcagaaaaaacaacatcagtcatcta
caggatgtatttgcaacaacaaggatgagaattacctgaatcaagttcaa
gatcccaaaACAATCAatttaaacttgaaaacttaaaatgagacaaaatg
acagattgcgaattagatgagggatgtcgacattagacaaaCTTACGGTA
GAGTGTGGACAtgaaatttaatctttttttatgAAGTTAACATGACTGTC
AGCAGAGGTTGCATAGTTTGAACCCATAGTTTTTTCTTAAGGGGTGGGGT
TGACACCTTCGGGGAAACCCAAGAAGGGGGGGTCGCAAATTTTCCAGAGG
AAGGGGGAATCAGTCAAAAAAGGGGGTAACCTTAtcgaaaaacttttctt
ttttttaagttgaacttaggataaaaaagaattttgacacTATTAATATG
TTTCCAGNTCGCAAATTTTCCAGAGGAAGGGGGAATCAGTCAAAAAAGGG
GGTAACCTTAtcgaaaaacttttcttttttttaagttgaacttaggataa
aaaagaattttgacacTATTAATATGTTTCCAGATTGAGAGGTGGTGGCG
CGAACTTCATGAACGCTTGGAGAAAAACATCAAGAAGGACCTCAATGC Coding sequence (CDS) from alignment at sc0006828:16..1413+ >TCONS_00045072 ID=TCONS_00045072|Name=TCONS_00045072|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at sc0006828:16..1413+ (Clytia hemisphaerica)
caaaatggtagaaaaaAGAGAGAAGGGCGATACACTACTGCGGGTGTTGA
TTCTTTGCTTTCGATTGATGGGCATGACAAGTTGATGGGTTACCAAAACT
CAACGTTTCCCATTGCAGTGTATGGAATGCTAGACCAGGCTAGTAGGAAA
ATACTAATCCTCAGATGTTGGACGACCAATAGCAATCCTGACGTTGTCGG
CCATTGGTACCTGGAATTGTTAAAGGAATCAAAAATATTGCCTGGTAGTA
TGAGATGTGACCGTGGCACAGAAACTGGCAAATTGGTAACAATTCATGGT
TATCTAAGAGCTCAAGTTGGAGCTCTCACTGACCCTGTTGATTCAATCAT
ATATGGCACTTCAACCACTAACCAGGTACTAGGGCTTGCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045072-exon-sc0006828-1491911889:16..1063 | TCONS_00045072-exon-sc0006828-1491911889:16..1063 | Clytia hemisphaerica | exon |
| TCONS_00045072-exon-sc0006828-1510915933:16..1063 | TCONS_00045072-exon-sc0006828-1510915933:16..1063 | Clytia hemisphaerica | exon |
| TCONS_00045072-exon-sc0006828-1575043694:16..1063 | TCONS_00045072-exon-sc0006828-1575043694:16..1063 | Clytia hemisphaerica | exon |
| TCONS_00045072-exon-sc0006828-1491911889:1223..1413 | TCONS_00045072-exon-sc0006828-1491911889:1223..1413 | Clytia hemisphaerica | exon |
| TCONS_00045072-exon-sc0006828-1510915933:1223..1413 | TCONS_00045072-exon-sc0006828-1510915933:1223..1413 | Clytia hemisphaerica | exon |
| TCONS_00045072-exon-sc0006828-1575043694:1223..1413 | TCONS_00045072-exon-sc0006828-1575043694:1223..1413 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006828 | supercontig | sc0006828:16..1413 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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