TCONS_00045041 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045041
Unique NameTCONS_00045041
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length705

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045041 ID=TCONS_00045041|Name=TCONS_00045041|organism=Clytia hemisphaerica|type=transcript|length=705bp
GAATGATACCTTTGTCAAACAGCCTACAGGGCTCCTCAAAATCATCTTCC
TCGCCTGCTTCCAGCGCTTCACGTCTTACGTGTTCAAGATTGGACCACAC
ATAGCAAATCGGGCCAAAAACTGTCATAAGGTTGTCGTGAACAGTCTTTA
ATGTTTTATCAATATGGAGTGCATCAAATTTCCCATTCTCCTGTAAAATT
TCCTTAATATGAGTGNTGGAGTGCATCAAATTTCCCATTCTCCTGTAAAA
TTTCCTTAATATGAGTATCCAAGATTGGTACTGTCTTCATATTTATTGGA
GGGGGGTACTCATCCAGTACTCTCTCCTTAAGCTCCTTCTGATTAAGATG
TTTAGACAAGTATTTGTTCACGTACACTGCCTGGTCCTCTGCCAGCTCCC
AAGCCTTAGCATTTTCTTCGATTAACTCAAACCTTTGGAGTTTCTTCTCC
GGTCCAACATCTGAATTCTCAGCTTTTCTTTTAGGGGGGCCATCACCATT
CTCTTCTTGAATTGGAGATGAGGCTTCAGTGACATCCAGTGACATCAACT
TGTTGTCTACGAAATAGACGTGAAAACATAATGAGAATCTCCAATCATTA
ACTGATTGTAAGATTATAACTTGAAATAACCCAACCACTGAATGATTGAA
GTAAATAACTACTTGGATAACGATTCTTACAATCACGGGATGATTGTTGA
ATACG
Run BLAST on NCBI

protein sequence of TCONS_00045041-protein

>TCONS_00045041-protein ID=TCONS_00045041-protein|Name=TCONS_00045041-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
VFNNHPVIVRIVIQVVIYFNHSVVGLFQVIILQSVNDWRFSLCFHVYFVD
NKLMSLDVTEASSPIQEENGDGPPKRKAENSDVGPEKKLQRFELIEENAK
AWELAEDQAVYVNKYLSKHLNQKELKERVLDEYPPPINMKTVPILDTHIK
EILQENGKFDALXHSY
Run BLAST on NCBI

transcript from alignment at sc0006746:774..1478

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045041 ID=TCONS_00045041|Name=TCONS_00045041|organism=Clytia hemisphaerica|type=transcript|length=705bp|location=Sequence derived from alignment at sc0006746:774..1478 (Clytia hemisphaerica)
CGTATTCAACAATCATCCCGTGATTGTAAGAATCGTTATCCAAGTAGTTA
TTTACTTCAATCATTCAGTGGTTGGGTTATTTCAAGTTATAATCTTACAA
TCAGTTAATGATTGGAGATTCTCATTATGTTTTCACGTCTATTTCGTAGA
CAACAAGTTGATGTCACTGGATGTCACTGAAGCCTCATCTCCAATTCAAG
AAGAGAATGGTGATGGCCCCCCTAAAAGAAAAGCTGAGAATTCAGATGTT
GGACCGGAGAAGAAACTCCAAAGGTTTGAGTTAATCGAAGAAAATGCTAA
GGCTTGGGAGCTGGCAGAGGACCAGGCAGTGTACGTGAACAAATACTTGT
CTAAACATCTTAATCAGAAGGAGCTTAAGGAGAGAGTACTGGATGAGTAC
CCCCCTCCAATAAATATGAAGACAGTACCAATCTTGGATACTCATATTAA
GGAAATTTTACAGGAGAATGGGAAATTTGATGCACTCCANCACTCATATT
AAGGAAATTTTACAGGAGAATGGGAAATTTGATGCACTCCATATTGATAA
AACATTAAAGACTGTTCACGACAACCTTATGACAGTTTTTGGCCCGATTT
GCTATGTGTGGTCCAATCTTGAACACGTAAGACGTGAAGCGCTGGAAGCA
GGCGAGGAAGATGATTTTGAGGAGCCCTGTAGGCTGTTTGACAAAGGTAT
CATTC

Coding sequence (CDS) from alignment at sc0006746:774..1478

>TCONS_00045041 ID=TCONS_00045041|Name=TCONS_00045041|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at sc0006746:774..1478 (Clytia hemisphaerica)
GTATTCAACAATCATCCCGTGATTGTAAGAATCGTTATCCAAGTAGTTAT
TTACTTCAATCATTCAGTGGTTGGGTTATTTCAAGTTATAATCTTACAAT
CAGTTAATGATTGGAGATTCTCATTATGTTTTCACGTCTATTTCGTAGAC
AACAAGTTGATGTCACTGGATGTCACTGAAGCCTCATCTCCAATTCAAGA
AGAGAATGGTGATGGCCCCCCTAAAAGAAAAGCTGAGAATTCAGATGTTG
GACCGGAGAAGAAACTCCAAAGGTTTGAGTTAATCGAAGAAAATGCTAAG
GCTTGGGAGCTGGCAGAGGACCAGGCAGTGTACGTGAACAAATACTTGTC
TAAACATCTTAATCAGAAGGAGCTTAAGGAGAGAGTACTGGATGAGTACC
CCCCTCCAATAAATATGAAGACAGTACCAATCTTGGATACTCATATTAAG
GAAATTTTACAGGAGAATGGGAAATTTGATGCACTCCANCACTCATATTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028626XLOC_028626Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045041-proteinTCONS_00045041-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045041-exon-sc0006746-1491911889:774..1478TCONS_00045041-exon-sc0006746-1491911889:774..1478Clytia hemisphaericaexon
TCONS_00045041-exon-sc0006746-1510915933:774..1478TCONS_00045041-exon-sc0006746-1510915933:774..1478Clytia hemisphaericaexon
TCONS_00045041-exon-sc0006746-1575043694:774..1478TCONS_00045041-exon-sc0006746-1575043694:774..1478Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006746supercontigsc0006746:774..1478 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.139502	0.0809873	0.0792335	67.0391	51.9081	23.4498	21.4369	8.16214	13.6628	9.42073	5.09716	2.33097	2.61835	0.162463	0	0	0.0550362	0	0	0.138314	0	0	0.074561	1.9967	6.99095	0.0980787	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top