TCONS_00045039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045039
Unique NameTCONS_00045039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length771

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045039 ID=TCONS_00045039|Name=TCONS_00045039|organism=Clytia hemisphaerica|type=transcript|length=771bp
TCTAATCTCACCATCCCAAGTGATAAGCTTTGGATTGATGTACTTGTCAT
TGTTTAACGGTTCTCCTTCTAATTTTTTACCTAAGAGGTCTACAATCTTT
TTTAATATAACTTCATATTGTCGAACCCAAGCTTCGTCTTCGATTACATT
AAACCCCATTTTCCACGGTGAATTTTCACTAAACCTCGAAACTCCTGATG
AAACACAATCTTTCGGAGTCTTAATATATAGCGACACAATTTTGCCTTGT
TCCGTCTCATAGCCAATCGTATATCGAGTATCATGCTTATTCGCAACAAC
TCCCTCAGTTAATCGGATCTTTTCTAAATCAACATTTTCTGTCACTTTGT
ATTTGTTGTTAAAttctttacttaaaatttcaatttgaccAAACTTGTAC
ATTTATTATATGTTTTTTTGAGTCCAACTTGCACTTTTTTTAATCTTCAT
CACTAGAAACCTCGTCATATTCCCAGTCTGTCGCTTCTGTACACTCTTCA
CCAGGCAAACGATCATGATAACTTCTATCAATTGGAACATTGCTATCTTT
AAAAAGTGCTTTTCTAAGCCAATACTCGTCTTCTTCACCTTCCCAGTCTT
CAGAATTGAGGCTGTTTTCAATCTGAAGCAATAATTTATCACGTTTAATT
TTCAATCTCCTGATCTTGTCTTTTGGAATTGGTCTAATTATATACAAATC
ACTAATTTCTGATTGAAAAGCTTCAACTTTATAAAGTATATCAAAATACC
ATTTACAATTATATTGACAGC
Run BLAST on NCBI

protein sequence of TCONS_00045039-protein

>TCONS_00045039-protein ID=TCONS_00045039-protein|Name=TCONS_00045039-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MYKFGQIEILSKEFNNKYKVTENVDLEKIRLTEGVVANKHDTRYTIGYET
EQGKIVSLYIKTPKDCVSSGVSRFSENSPWKMGFNVIEDEAWVRQYEVIL
KKIVDLLGKKLEGEPLNNDKYINPKLITWDGEIR
Run BLAST on NCBI

transcript from alignment at sc0006739:732..1502

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045039 ID=TCONS_00045039|Name=TCONS_00045039|organism=Clytia hemisphaerica|type=transcript|length=771bp|location=Sequence derived from alignment at sc0006739:732..1502 (Clytia hemisphaerica)
GCTGTCAATATAATTGTAAATGGTATTTTGATATACTTTATAAAGTTGAA
GCTTTTCAATCAGAAATTAGTGATTTGTATATAATTAGACCAATTCCAAA
AGACAAGATCAGGAGATTGAAAATTAAACGTGATAAATTATTGCTTCAGA
TTGAAAACAGCCTCAATTCTGAAGACTGGGAAGGTGAAGAAGACGAGTAT
TGGCTTAGAAAAGCACTTTTTAAAGATAGCAATGTTCCAATTGATAGAAG
TTATCATGATCGTTTGCCTGGTGAAGAGTGTACAGAAGCGACAGACTGGG
AATATGACGAGGTTTCTAGTGATGAAGATTAAAAAAAGTGCAAGTTGGAC
TCAAAAAAACATATAATAAATGTACAAGTTTggtcaaattgaaattttaa
gtaaagaaTTTAACAACAAATACAAAGTGACAGAAAATGTTGATTTAGAA
AAGATCCGATTAACTGAGGGAGTTGTTGCGAATAAGCATGATACTCGATA
TACGATTGGCTATGAGACGGAACAAGGCAAAATTGTGTCGCTATATATTA
AGACTCCGAAAGATTGTGTTTCATCAGGAGTTTCGAGGTTTAGTGAAAAT
TCACCGTGGAAAATGGGGTTTAATGTAATCGAAGACGAAGCTTGGGTTCG
ACAATATGAAGTTATATTAAAAAAGATTGTAGACCTCTTAGGTAAAAAAT
TAGAAGGAGAACCGTTAAACAATGACAAGTACATCAATCCAAAGCTTATC
ACTTGGGATGGTGAGATTAGA

Coding sequence (CDS) from alignment at sc0006739:732..1502

>TCONS_00045039 ID=TCONS_00045039|Name=TCONS_00045039|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0006739:732..1502 (Clytia hemisphaerica)
ATGTACAAGTTTggtcaaattgaaattttaagtaaagaaTTTAACAACAA
ATACAAAGTGACAGAAAATGTTGATTTAGAAAAGATCCGATTAACTGAGG
GAGTTGTTGCGAATAAGCATGATACTCGATATACGATTGGCTATGAGACG
GAACAAGGCAAAATTGTGTCGCTATATATTAAGACTCCGAAAGATTGTGT
TTCATCAGGAGTTTCGAGGTTTAGTGAAAATTCACCGTGGAAAATGGGGT
TTAATGTAATCGAAGACGAAGCTTGGGTTCGACAATATGAAGTTATATTA
AAAAAGATTGTAGACCTCTTAGGTAAAAAATTAGAAGGAGAACCGTTAAA
CAATGACAAGTACATCAATCCAAAGCTTATCACTTGGGATGGTGAGATTA
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028624XLOC_028624Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045039-exon-sc0006739-1491911889:732..1502TCONS_00045039-exon-sc0006739-1491911889:732..1502Clytia hemisphaericaexon
TCONS_00045039-exon-sc0006739-1510915933:732..1502TCONS_00045039-exon-sc0006739-1510915933:732..1502Clytia hemisphaericaexon
TCONS_00045039-exon-sc0006739-1575043694:732..1502TCONS_00045039-exon-sc0006739-1575043694:732..1502Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045039-proteinTCONS_00045039-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006739supercontigsc0006739:732..1502 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0615594	0.0714764	0.0699285	2.4688	1.61452	2.43482	3.11524	2.92581	2.6357	1.98266	3.27933	0.167937	0.43601	0.573535	1.07711	0.473897	1.84577	0	0.351108	1.70899	1.07175	0.506666	0.723852	1.42332	1.99616	7.61733	4.89613	0.140134	0.142774
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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