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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044997 ID=TCONS_00044997|Name=TCONS_00044997|organism=Clytia hemisphaerica|type=transcript|length=1194bp
ATGTAGTAGATATGAATAAAGTAGATgcatttcacgagtttgtagcAAAG
TATgcgaaaaatatcaaaagcaCATAGGAAGAAAAGACAATGAATTTCAA
CAATTGGAAGACCAAGCCAGTTGTCATCAAAGCTTCATCAAGCGAAAACC
TCCACCATTCATCACCAAATACATCAACACATCAGTCCATCAGAGAAATT
CCTTATAATGATAAAGAACAATTAAAAAGAGTTTTATCAAGTCCAGCACC
ACAACTAAATCCAGCACGACTACGGCTACCTTCTTTGAATCTGATTGGTT
CATCTTCAACACCAAACTCGCCCCAAGCCTCTCCATTAATGCAACGCGCG
AGCAGACTTGCACCTGTAGGAACTCAACAAAATGATACGACgaacaaaga
aaaacattcaGCAAATATGTTTCAGATAGACGGTCGAAAAAGAAGTGTCA
Gttattcaaatttctcaaatttttacgaatcttaaaaaacgtgtattggc
ttacaaaatttacaaaaacacGAGCTAAGTATTAGAACCGAACTGCAATG
AGAAACAGTAAATACAACGGAGGACTAAAAAGCCCTAAAAGTACGTAAGT
ACCAATCAAATTGGTATTTATAAGGCTCTATTTTGAGTTTGAGTGAGGAA
TTTATGTAAATTGTTAttaccgtaaatcctcgaataagcgcccgggcgct
tatttaatttttcaggctcaaagccgggcgcttattcgagcggggcgctt
atttttttatttcggaaattcgtatatcaacaaattcggaatctgcttaa
actgggttgatttttcaaaaaaggatgaataaaagaaaaattggaaaaat
ccaattgacaatttctatcattttattcttaattgctttctttCTGCTTA
AGACACAAGTATCTACtcaatatcttattcaatcaaGAACAATatttgaa
taagcgccccttcCTGGAGGAGGCGCTTATTCAAAGGGGGGCacttataa
tattattttaactaaaaggggcgcttattcgagcagGGTGgttattcaag
cggggcgcttattcgaggatttacggtatGGTTTCTATAGTAGAAGAGAT
ATCTATGCATTATTATGGTTGTAActtaaataaaagcaaaatacaTTCAA
tcatttacaatttttaaaaaactgaaatAGTTCCTTTTTCAGCC Run BLAST on NCBI protein sequence of TCONS_00044997-protein >TCONS_00044997-protein ID=TCONS_00044997-protein|Name=TCONS_00044997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MNFNNWKTKPVVIKASSSENLHHSSPNTSTHQSIREIPYNDKEQLKRVLS
SPAPQLNPARLRLPSLNLIGSSSTPNSPQASPLMQRASRLAPVGTQQNDT
TNKEKHSANMFQIDGRKRSVSYSNFSNFYES Run BLAST on NCBI transcript from alignment at sc0006639:1..1618- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044997 ID=TCONS_00044997|Name=TCONS_00044997|organism=Clytia hemisphaerica|type=transcript|length=1618bp|location=Sequence derived from alignment at sc0006639:1..1618- (Clytia hemisphaerica)
ATGTAGTAGATATGAATAAAGTAGATGCATTTCACGAGTTTGTAGCAAAG
TGAGTGAATAGAAGAGTTGAGTTCACTGATCCCTAACTACTTGACTGGAT
CGGGCTTTCAATATAAAAGGAAACGTGTCCAGTTTTAGAGCTGACAAGCT
CGCCATCTAAGTTTCAATTCTGGTCATCAGTAGCGCGATTCGAATATTTT
GAAATTCGAACGTTCGAGAATCAAAGACAGCTTACAAAATAACATGGCGG
ACTAGTCGACAAAACTGGAAACATTTCTATGAGAAATTTGTGAGAAATTA
GCCTATGGTTGAATACCATATCATATCAGGTTAGGAGAGGTGTGTGAGGT
CATGACTGGAAAGAAAGGTNAATTAGCCTATGGTTGAATACCATATCATA
TCAGGTTAGGAGAGGTGTGTGAGGTCATGACTGGAAAGAAAGGTTATCAT
TTTCTTTTACTTTGATGTTTTAGGTATGCGAAAAATATCAAAAGCACATA
GGAAGAAAAGACAATGAATTTCAACAATTGGAAGACCAAGCCAGTTGTCA
TCAAAGCTTCATCAAGCGAAAACCTCCACCATTCATCACCAAATACATCA
ACACATCAGTCCATCAGAGAAATTCCTTATAATGATAAAGAACAATTAAA
AAGAGTTTTATCAAGTCCAGCACCACAACTAAATCCAGCACGACTACGGC
TACCTTCTTTGAATCTGATTGGTTCATCTTCAACACCAAACTCGCCCCAA
GCCTCTCCATTAATGCAACGCGCGAGCAGACTTGCACCTGTAGGAACTCA
ACAAAATGATACGACGAACAAAGAAAAACATTCAGCAAATATGTTTCAGA
TAGACGGTCGAAAAAGAAGTGTCAGTTATTCAAATTTCTCAAATTTTTAC
GAATCTTAAAAAACGTGTATTGGCTTACAAAATTTACAAAAACACGAGCT
AAGTATTAGAACCGAACTGCAATGAGAAACAGTAAATACAACGGAGGACT
AAAAAGCCCTAAAAGTACGTAAGTACCAATCAAATTGGTATTTATAAGGC
TCTATTTTGAGTTTGAGTGAGGAATTTATGTAAATTGTTATTACCGTAAA
TCCTCGAATAAGCGCCCGGGCGCTTATTTAATTTTTCAGGCTCAAAGCCG
GGCGCTTATTCGAGCGGGGCGCTTATTTTTTTATTTCGGAAATTCGTATA
TCAACAAATTCGGAATCTGCTTAAACTGGGTTGATTTTTCAAAAAAGGAT
GAATAAAAGAAAAATTGGAAAAATCCAATTGACAATTTCTATCATTTTAT
TCTTAATTGCTTTCTTTCTGCTTAAGACACAAGTATCTACTCAATATCTT
ATTCAATCAAGAACAATATTTGAATAAGCGCCCCTTCCTGGAGGAGGCGC
TTATTCAAAGGGGGGCACTTATAATATTATTTTAACTAAAAGGGGCGCTT
ATTCGAGCAGGGTGGTTATTCAAGCGGGGCGCTTATTCGAGGATTTACGG
TATGGTTTCTATAGTAGAAGAGATATCTATGCATTATTATGGTTGTAACT
TAAATAAAAGCAAAATACATTCAATCATTTACAATTTTTAAAAAACTGAA
ATAGTTCCTTTTTCAGCC Coding sequence (CDS) from alignment at sc0006639:1..1618- >TCONS_00044997 ID=TCONS_00044997|Name=TCONS_00044997|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0006639:1..1618- (Clytia hemisphaerica)
ATGAATTTCAACAATTGGAAGACCAAGCCAGTTGTCATCAAAGCTTCATC
AAGCGAAAACCTCCACCATTCATCACCAAATACATCAACACATCAGTCCA
TCAGAGAAATTCCTTATAATGATAAAGAACAATTAAAAAGAGTTTTATCA
AGTCCAGCACCACAACTAAATCCAGCACGACTACGGCTACCTTCTTTGAA
TCTGATTGGTTCATCTTCAACACCAAACTCGCCCCAAGCCTCTCCATTAA
TGCAACGCGCGAGCAGACTTGCACCTGTAGGAACTCAACAAAATGATACG
ACGAACAAAGAAAAACATTCAGCAAATATGTTTCAGATAGACGGTCGAAA
AAGAAGTGTCAGTTATTCAAATTTCTCAAATTTTTACGAATCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044997-exon-sc0006639-1575043694:1570..1618 | TCONS_00044997-exon-sc0006639-1575043694:1570..1618 | Clytia hemisphaerica | exon |
| TCONS_00044997-exon-sc0006639-1575043694:1..1145 | TCONS_00044997-exon-sc0006639-1575043694:1..1145 | Clytia hemisphaerica | exon |
| TCONS_00044997-exon-sc0006639-1510915933:1570..1618 | TCONS_00044997-exon-sc0006639-1510915933:1570..1618 | Clytia hemisphaerica | exon |
| TCONS_00044997-exon-sc0006639-1510915933:1..1145 | TCONS_00044997-exon-sc0006639-1510915933:1..1145 | Clytia hemisphaerica | exon |
| TCONS_00044997-exon-sc0006639-1491911889:1570..1618 | TCONS_00044997-exon-sc0006639-1491911889:1570..1618 | Clytia hemisphaerica | exon |
| TCONS_00044997-exon-sc0006639-1491911889:1..1145 | TCONS_00044997-exon-sc0006639-1491911889:1..1145 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006639 | supercontig | sc0006639:1..1618 - |
Blast
The following BLAST results are available for this feature:
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