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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044993 ID=TCONS_00044993|Name=TCONS_00044993|organism=Clytia hemisphaerica|type=transcript|length=1397bp
GAATAAGCTTTTAGAATAAaaggactggaatctcgaaatgaTTCAAACGT
ACACTATATTTCTAATCATCTTGATTTCGTTGGGGTCTATCTCAAACGGG
TTGATGGTTTACCATTGCGCGCGCCAGCTCAAGACACTGAAAAGTGCAAT
TTTATTGAGCATGGCTGTCACAGACCTCTTACAATGTTTGATTGGATATA
TCTTACAAATGGTTATCAACGAAATTGTACAGAATGACAATTTATGTATC
ACCGCTGCCTTCTGTTTTGGTTTATGTGGTGTGGCATCTATCAATCATTT
CCTGGTACTTTTCATCGAAAGAACCATACGTATAACTGGTTCAGGTCCTC
TGATCTCGAAACTGGATGACAAGAAGTATCACATACTTGCTGTTATATGG
GCTTATTCCTTGTTTTGGACAGCCGCTCCTATCTTTGGGTGGGGTAGTTA
TCAAAGCAAAATCATCCTGGTACCGAACTGTCCCGTACGTGTCCCCTTCT
TATCGCTCTCACAAGAACTCCATTTGTACGGGATCATTATATTGGTGTTC
GGGGTTGCTGTTCTTTCGATCGGTGGACTTTTCCTATACACGCAATCTGT
TTTATCCAGGAACTTGAACTCGATTACAAAGAAAAGTGAATACCCACAAC
CACATTTAGTGGCACCACGACGCCGTCAAATACGGCGTTTCGACCAAATG
ACTCTTGGAATGTCGGCCGTCTTTTTCTTCGCTTGGATTCCGTTCGCTTG
CATCGCTTTTTATTATTTGATCGTCAAAAAGACACCACACGAACTATTGG
TTTTAGTGGCTCCTGTGATGGCGAAATCATGTGTCTTGATTAATCCACTC
GTCTACGCCTACTATTATTTTCACATCGGAATCAAAGACTTTTTCATGCT
TGATTCCTTTAAAACTCAAAGGCGAATGGATACTCAAAAGACAGACTCCA
GACGTCCCTTTGAACCTCCAGTGAACACGTGGGTTTGAAATCTTCATTTT
ATATTTAACTTTGGAAAACGCTTTATCAGCAGGATCCACAGTCAAACGTA
ATGAATTACATGATCATCTCATTTTTAAACGCTTTGTGGAATTGTTTAAC
CCTAATGCATCTTAAGTCTGTTCCTAAAAAAGAGGCGACCGTAAGTTTAA
GTACATTGCTCTCGAAGGAGAAGAATATAATTAGAAGAGATACCCCATTG
GAAAGATAATCTGAAGTAGATTATTTTTGAAGTAACGATTTTTTCTATGG
GACCAAAGAAAGTGAATTTATACTTTTGCGAAACTTTggcagtttttttt
tcttcattttttgaaaaaaaagttaagcCTTGAGGCTTGAAATCATCAAC
GAGattatcttttttgttttgaataacatGTGGACTGTCAATTTTTT Run BLAST on NCBI protein sequence of TCONS_00044993-protein >TCONS_00044993-protein ID=TCONS_00044993-protein|Name=TCONS_00044993-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
MIQTYTIFLIILISLGSISNGLMVYHCARQLKTLKSAILLSMAVTDLLQC
LIGYILQMVINEIVQNDNLCITAAFCFGLCGVASINHFLVLFIERTIRIT
GSGPLISKLDDKKYHILAVIWAYSLFWTAAPIFGWGSYQSKIILVPNCPV
RVPFLSLSQELHLYGIIILVFGVAVLSIGGLFLYTQSVLSRNLNSITKKS
EYPQPHLVAPRRRQIRRFDQMTLGMSAVFFFAWIPFACIAFYYLIVKKTP
HELLVLVAPVMAKSCVLINPLVYAYYYFHIGIKDFFMLDSFKTQRRMDTQ
KTDSRRPFEPPVNTWV Run BLAST on NCBI transcript from alignment at sc0006631:143..1539 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044993 ID=TCONS_00044993|Name=TCONS_00044993|organism=Clytia hemisphaerica|type=transcript|length=1397bp|location=Sequence derived from alignment at sc0006631:143..1539 (Clytia hemisphaerica)
AAAAAATTGACAGTCCACatgttattcaaaacaaaaaagataatCTCGTT
GATGATTTCAAGCCTCAAGgcttaacttttttttcaaaaaatgaagaaaa
aaaaactgccAAAGTTTCGCAAAAGTATAAATTCACTTTCTTTGGTCCCA
TAGAAAAAATCGTTACTTCAAAAATAATCTACTTCAGATTATCTTTCCAA
TGGGGTATCTCTTCTAATTATATTCTTCTCCTTCGAGAGCAATGTACTTA
AACTTACGGTCGCCTCTTTTTTAGGAACAGACTTAAGATGCATTAGGGTT
AAACAATTCCACAAAGCGTTTAAAAATGAGATGATCATGTAATTCATTAC
GTTTGACTGTGGATCCTGCTGATAAAGCGTTTTCCAAAGTTAAATATAAA
ATGAAGATTTCAAACCCACGTGTTCACTGGAGGTTCAAAGGGACGTCTGG
AGTCTGTCTTTTGAGTATCCATTCGCCTTTGAGTTTTAAAGGAATCAAGC
ATGAAAAAGTCTTTGATTCCGATGTGAAAATAATAGTAGGCGTAGACGAG
TGGATTAATCAAGACACATGATTTCGCCATCACAGGAGCCACTAAAACCA
ATAGTTCGTGTGGTGTCTTTTTGACGATCAAATAATAAAAAGCGATGCAA
GCGAACGGAATCCAAGCGAAGAAAAAGACGGCCGACATTCCAAGAGTCAT
TTGGTCGAAACGCCGTATTTGACGGCGTCGTGGTGCCACTAAATGTGGTT
GTGGGTATTCACTTTTCTTTGTAATCGAGTTCAAGTTCCTGGATAAAACA
GATTGCGTGTATAGGAAAAGTCCACCGATCGAAAGAACAGCAACCCCGAA
CACCAATATAATGATCCCGTACAAATGGAGTTCTTGTGAGAGCGATAAGA
AGGGGACACGTACGGGACAGTTCGGTACCAGGATGATTTTGCTTTGATAA
CTACCCCACCCAAAGATAGGAGCGGCTGTCCAAAACAAGGAATAAGCCCA
TATAACAGCAAGTATGTGATACTTCTTGTCATCCAGTTTCGAGATCAGAG
GACCTGAACCAGTTATACGTATGGTTCTTTCGATGAAAAGTACCAGGAAA
TGATTGATAGATGCCACACCACATAAACCAAAACAGAAGGCAGCGGTGAT
ACATAAATTGTCATTCTGTACAATTTCGTTGATAACCATTTGTAAGATAT
ATCCAATCAAACATTGTAAGAGGTCTGTGACAGCCATGCTCAATAAAATT
GCACTTTTCAGTGTCTTGAGCTGGCGCGCGCAATGGTAAACCATCAACCC
GTTTGAGATAGACCCCAACGAAATCAAGATGATTAGAAATATAGTGTACG
TTTGAAtcatttcgagattccagtccttTTATTCTAAAAGCTTATTC Coding sequence (CDS) from alignment at sc0006631:143..1539 >TCONS_00044993 ID=TCONS_00044993|Name=TCONS_00044993|organism=Clytia hemisphaerica|type=CDS|length=951bp|location=Sequence derived from alignment at sc0006631:143..1539 (Clytia hemisphaerica)
TCAAACCCACGTGTTCACTGGAGGTTCAAAGGGACGTCTGGAGTCTGTCT
TTTGAGTATCCATTCGCCTTTGAGTTTTAAAGGAATCAAGCATGAAAAAG
TCTTTGATTCCGATGTGAAAATAATAGTAGGCGTAGACGAGTGGATTAAT
CAAGACACATGATTTCGCCATCACAGGAGCCACTAAAACCAATAGTTCGT
GTGGTGTCTTTTTGACGATCAAATAATAAAAAGCGATGCAAGCGAACGGA
ATCCAAGCGAAGAAAAAGACGGCCGACATTCCAAGAGTCATTTGGTCGAA
ACGCCGTATTTGACGGCGTCGTGGTGCCACTAAATGTGGTTGTGGGTATT
CACTTTTCTTTGTAATCGAGTTCAAGTTCCTGGATAAAACAGATTGCGTG
TATAGGAAAAGTCCACCGATCGAAAGAACAGCAACCCCGAACACCAATAT
AATGATCCCGTACAAATGGAGTTCTTGTGAGAGCGATAAGAAGGGGACAC
GTACGGGACAGTTCGGTACCAGGATGATTTTGCTTTGATAACTACCCCAC
CCAAAGATAGGAGCGGCTGTCCAAAACAAGGAATAAGCCCATATAACAGC
AAGTATGTGATACTTCTTGTCATCCAGTTTCGAGATCAGAGGACCTGAAC
CAGTTATACGTATGGTTCTTTCGATGAAAAGTACCAGGAAATGATTGATA
GATGCCACACCACATAAACCAAAACAGAAGGCAGCGGTGATACATAAATT
GTCATTCTGTACAATTTCGTTGATAACCATTTGTAAGATATATCCAATCA
AACATTGTAAGAGGTCTGTGACAGCCATGCTCAATAAAATTGCACTTTTC
AGTGTCTTGAGCTGGCGCGCGCAATGGTAAACCATCAACCCGTTTGAGAT
AGACCCCAACGAAATCAAGATGATTAGAAATATAGTGTACGTTTGAAtca
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044993-exon-sc0006631-1491911889:143..1539 | TCONS_00044993-exon-sc0006631-1491911889:143..1539 | Clytia hemisphaerica | exon |
| TCONS_00044993-exon-sc0006631-1510915933:143..1539 | TCONS_00044993-exon-sc0006631-1510915933:143..1539 | Clytia hemisphaerica | exon |
| TCONS_00044993-exon-sc0006631-1575043694:143..1539 | TCONS_00044993-exon-sc0006631-1575043694:143..1539 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006631 | supercontig | sc0006631:143..1539 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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