TCONS_00044954 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044954
Unique NameTCONS_00044954
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044954 ID=TCONS_00044954|Name=TCONS_00044954|organism=Clytia hemisphaerica|type=transcript|length=277bp
TCAGGGTGTGATTGTTGTTTCAGATAATACTTTCATGTCACCTGTTTTCC
AAAGACCTCTGATGTGGGGAGCTGATGTTGCATTTGCATCTGTCACTAAA
TACATCAATGGTCATTCTGACTCTGTTATGGGATCCATCGCTACCAACAA
CGAAGAACTTTACAATAATTGCAAATTCCTTCAAAACGGTAATAATTGGA
ATGACCTCAATGAATGTCATATCTTTTTTAATTAGCAGCTAAATCTATCT
CCAAAAGCCTTCATTTCCATGTCTTCC
Run BLAST on NCBI

transcript from alignment at sc0006524:255..1384-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044954 ID=TCONS_00044954|Name=TCONS_00044954|organism=Clytia hemisphaerica|type=transcript|length=1130bp|location=Sequence derived from alignment at sc0006524:255..1384- (Clytia hemisphaerica)
TCAGGGTGTGATTGTTGTTTCAGATAATACTTTCATGTCACCTGTTTTCC
AAGTAAGATATCCTTCTTCATTTTATAGTCGGTTTCAAGTTTCCGAGATT
ACCTTCTCAAAGCATTGTTGCCTTTAATGGAGATGCTTACCCCTGGATAT
CGTATTTTTTTACTTGAAAAGACACTTTACCCTCTTGGATATCCACTTTT
GAACAAAAATCGTTAACCCCCTGGATATCCGATATCCTCAACAGGGGGCA
CGGACTATTTCTGGAAAAGCCCAATTAGTGAGAGAGGACTGTAAAACTTT
TTCTTGAATTTTATAGAGACCTCTGATGTGGGGAGCTGATGTTGCATTTG
CATCTGTCACTAAATACATCAATGGTAATATAACACGCTTTATTGTACGG
CCTATACCAATTAATTTTATAACGGTTTTAACACCAATTAATTTTGTTAA
AATCAAGACAAGGTAAAATTTTGCTGCCGTCGAAGCAAAAAGTCCAAGCT
CAAAACTAGTATAAACGAGTATAGTAGTATCTTGTCCAGATAGGATCGTC
CAGATAGAATCCTGTTATACTATATGCTCCCGGTTATACTTAGCTCCAAG
GGGTTATAAATTTACTTCAAATAACCGGGAATCTACTGTAGATTCTGAAG
TTATACAAAAATTTTGAGTACACTCCCTCCCTGATTATCAACCAATTCTC
AAAGAACTCTCCTGGATGCTTGTCAATTTTTATAATAATGATTATTTAAT
ACATCCCCTTCTCACAGATCCACTGGGATCCTTTCCCACTGGAAAAATTG
GCTAAAATATCGCCCCCGGTGGAAATTATACTCCAATTTTTGTTCCCACT
GAAAGTTATTAAATACCATTCCTCACTGCAAAATATTATGCTATTTTTCC
ACTCCCCACTGAATTTTATGTCTTGAAAACAAAAGAATTCTTTTAATTGT
TTTCTCAATATAGGTCATTCTGACTCTGTTATGGGATCCATCGCTACCAA
CAACGAAGAACTTTACAATAATTGCAAATTCCTTCAAAACGGTAATAATT
GGAATGACCTCAATGAATGTCATATCTTTTTTAATTAGCAGCTAAATCTA
TCTCCAAAAGCCTTCATTTCCATGTCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028545XLOC_028545Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044954-exon-sc0006524-1575043694:1333..1384TCONS_00044954-exon-sc0006524-1575043694:1333..1384Clytia hemisphaericaexon
TCONS_00044954-exon-sc0006524-1575043694:1011..1068TCONS_00044954-exon-sc0006524-1575043694:1011..1068Clytia hemisphaericaexon
TCONS_00044954-exon-sc0006524-1575043694:255..421TCONS_00044954-exon-sc0006524-1575043694:255..421Clytia hemisphaericaexon
TCONS_00044954-exon-sc0006524-1510915933:1333..1384TCONS_00044954-exon-sc0006524-1510915933:1333..1384Clytia hemisphaericaexon
TCONS_00044954-exon-sc0006524-1510915933:1011..1068TCONS_00044954-exon-sc0006524-1510915933:1011..1068Clytia hemisphaericaexon
TCONS_00044954-exon-sc0006524-1510915933:255..421TCONS_00044954-exon-sc0006524-1510915933:255..421Clytia hemisphaericaexon
TCONS_00044954-exon-sc0006524-1491911889:1333..1384TCONS_00044954-exon-sc0006524-1491911889:1333..1384Clytia hemisphaericaexon
TCONS_00044954-exon-sc0006524-1491911889:1011..1068TCONS_00044954-exon-sc0006524-1491911889:1011..1068Clytia hemisphaericaexon
TCONS_00044954-exon-sc0006524-1491911889:255..421TCONS_00044954-exon-sc0006524-1491911889:255..421Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006524supercontigsc0006524:255..1384 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.519828	0.597109	0.586338	0.693751	1.09642	1.98418	9.90702	240.574	131.569	123.486	308.391	215.962	222.355	7.31988	3.45333	6.233	7.93626	1.67158	0.572251	0	0.768689	0	0.555147	14.3606	21.6895	0	0	0	0
Blast
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BLAST of TCONS_00044954 vs. Swiss-Prot (Human)
Match: CGL (Cystathionine gamma-lyase OS=Homo sapiens GN=CTH PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 8.767e-21
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 2 
Query:    8 VIVVSDNTFMSPVFQRPLMWGADVAFASVTKYINGHSDSVMGSIATNNEELYNNCKFLQN 187
            +I+V DNTFMSP FQRPL  GAD++  S TKY+NGHSD VMG ++ N E L+N  +FLQN
Sbjct:  182 IILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQN 241
The following BLAST results are available for this feature:
BLAST of TCONS_00044954 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CGL8.767e-2161.67Cystathionine gamma-lyase OS=Homo sapiens GN=CTH P... [more]
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