TCONS_00044948 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044948
Unique NameTCONS_00044948
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044948 ID=TCONS_00044948|Name=TCONS_00044948|organism=Clytia hemisphaerica|type=transcript|length=570bp
NTTTGAGTAGGCAaatgaataacaaaaagaatacaagaaaataataaaac
aattaacaaaaacctattaaaaaatggtagaaatattactttgttttgaa
tattacaataattttaaaaaatctaataattatgaaaaacagaagaaaaa
atgataaatataaaaaataggaataaataatataaaaataggaataaata
atacaataaataaaataatacattaAATGCCATATCCATAGGTATGTAAG
TTTCCTGACGAGAtagtaatcaaaaatgaattaatgaaaGGCATCTTTAA
ACTAATTTTCCTTTGTCTATAGATTTTTTTCTACCATAGAccatccataa
aagacactcacACATATTTAACCCATTTCTCACACCCTCCCCAACTTCAT
CTGCAAATGTCGAATTCAACAGAGCCCTCCTTTTGGTTAATGCAGAAAAA
AAGCCTTCCTCCCCAAAGAATAAATGTCTTTTAAGAATAGTCTTTAAACG
TCAGAAAACTTAAATAAGAATGGACGGGGTGGCGGGATGACCTTAATTGC
ATATTTCCAACAGAGTTAAG
Run BLAST on NCBI

transcript from alignment at sc0006519:790..1359

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044948 ID=TCONS_00044948|Name=TCONS_00044948|organism=Clytia hemisphaerica|type=transcript|length=570bp|location=Sequence derived from alignment at sc0006519:790..1359 (Clytia hemisphaerica)
CTTAACTCTGTTGGAAATATGCAATTAAGGTCATCCCGCCACCCCGTCCA
TTCTTATTTAAGTTTTCTGACGTTTAAAGACTATTCTTAAAAGACATTTA
TTCTTTGGGGAGGAAGGCTTTTTTTCTGCATTAACCAAAAGGAGGGCTCT
GTTGAATTCGACATTTGCAGATGAAGTTGGGGAGGGTGTGAGAAATGGGT
TAAATATGTgtgagtgtcttttatggatggTCTATGGTAGAAAAAAATCT
ATAGACAAAGGAAAATTAGTTTAAAGATGCCtttcattaattcatttttg
attactaTCTCGTCAGGAAACTTACATACCTATGGATATGGCATTtaatg
tattattttatttattgtattatttattcctatttttatattatttattc
ctattttttatatttatcattttttcttctgtttttcataattattagat
tttttaaaattattgtaatattcaaaacaaagtaatatttctaccatttt
ttaataggtttttgttaattgttttattattttcttgtattctttttgtt
attcattTGCCTACTCAAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028539XLOC_028539Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044948-exon-sc0006519-1491911889:790..1359TCONS_00044948-exon-sc0006519-1491911889:790..1359Clytia hemisphaericaexon
TCONS_00044948-exon-sc0006519-1510915933:790..1359TCONS_00044948-exon-sc0006519-1510915933:790..1359Clytia hemisphaericaexon
TCONS_00044948-exon-sc0006519-1575043694:790..1359TCONS_00044948-exon-sc0006519-1575043694:790..1359Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006519supercontigsc0006519:790..1359 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.330409	0	0	0	2.13451	2.8028	2.52693	2.09664	1.7666	2.25015	1.79301	1.76478	1.58438	2.09718	0.911911	1.3947	0.724731	1.36527	1.98329	1.93387	0.914356	1.04834	1.35034	1.31244	0	0.886283	3.65313	2.74087	2.13859	2.78303
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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