TCONS_00044934 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044934
Unique NameTCONS_00044934
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044934 ID=TCONS_00044934|Name=TCONS_00044934|organism=Clytia hemisphaerica|type=transcript|length=370bp
aaagaataaaaaagtttcagctTTAAATGCTTTTAGCTTTTTTACAGCTG
GGATTAGATAATTCTTTAATTCAAGCTGGTGCGTAAATATGCTTTACTCT
TCCTCGCCTCAGGTCACAACGTTCGACAATGTGTTGATGTGAACATGGAT
AAAATCATTGTCATTGTTCTGCAATAAATTTTATATTGTAAGTATGTATT
TTTCATATTCATCATTGTTCTGCAATAAATTTTATATTGTAAGTAtgtaa
ttttcttcaaatttcttttgtattcaacACAATTAAAATCAGAGAGTATC
CTAATTAGTTTAACTAATAAGAGCATTACAAACTTAATTCGTACTAGAAA
CTTTTCTCCTTCAGGCATCA
Run BLAST on NCBI

transcript from alignment at sc0006489:976..1345

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044934 ID=TCONS_00044934|Name=TCONS_00044934|organism=Clytia hemisphaerica|type=transcript|length=370bp|location=Sequence derived from alignment at sc0006489:976..1345 (Clytia hemisphaerica)
TGATGCCTGAAGGAGAAAAGTTTCTAGTACGAATTAAGTTTGTAATGCTC
TTATTAGTTAAACTAATTAGGATACTCTCTGATTTTAATTGTgttgaata
caaaagaaatttgaagaaaattacaTACTTACAATATAAAATTTATTGCA
GAACAATGATGAATATGAAAAATACATACTTACAATATAAAATTTATTGC
AGAACAATGACAATGATTTTATCCATGTTCACATCAACACATTGTCGAAC
GTTGTGACCTGAGGCGAGGAAGAGTAAAGCATATTTACGCACCAGCTTGA
ATTAAAGAATTATCTAATCCCAGCTGTAAAAAAGCTAAAAGCATTTAAag
ctgaaacttttttattcttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028529XLOC_028529Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044934-exon-sc0006489-1491911889:976..1345TCONS_00044934-exon-sc0006489-1491911889:976..1345Clytia hemisphaericaexon
TCONS_00044934-exon-sc0006489-1510915933:976..1345TCONS_00044934-exon-sc0006489-1510915933:976..1345Clytia hemisphaericaexon
TCONS_00044934-exon-sc0006489-1575043694:976..1345TCONS_00044934-exon-sc0006489-1575043694:976..1345Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006489supercontigsc0006489:976..1345 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.72891	6.07474	1.47973	0.504293	1.21112	1.23229	0.323489	0.809369	3.05042	5.23016	3.66421	2.67042	1.68109	1.81625	3.52534	3.51462	6.00515	4.44633	4.3703	3.12149	6.94387	6.76425	6.50952	6.31417	0.494193	0	17.614	10.8054	8.21289	7.06004
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044934 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top