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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044927 ID=TCONS_00044927|Name=TCONS_00044927|organism=Clytia hemisphaerica|type=transcript|length=1661bp
ATTGATATTACCAACAAAGTTGGTGGAAAAATAAAGAAGTACAACAACCG
ATCGTCTTACCAAAAGAAAGAATCCTATGACAGACAAGACAAATCTTACA
ATAAATCGCAGTCTTTTTTAGGACACGGCCGAAATTCCTGGCAACAAGGT
CGGAAGAATTATCACAATCATCGTCATtcaagcaacaacaacaacaacag
aaatcaaaagagaaaaaactaAAAGTGAGTTCTttgaaaaacatcaaaga
aCAAATTGAAGCATTGAATGATTACTTAACAGCGAAAGTTGAAAACTTTA
GTGCTGGACAACTCTCCAATCATTTAGAAGAATGGGAGAATTATACAAGT
GATCCAGAAATTCTTCAAATTGTTCTTGGTGACACTATTAAATTTAACCA
TGATTTCTATTATCATTATTTCAATTTCACTTNGTGACACTATTAAATTT
AACCATGATTTCTATTATcagcatttttgtaaaaatgctaATTTCACTCT
TGTGGAAGAAGCCTTTGTgtcaacaaaaattcaaaaacttatttcaaaag
GGGTAATAGTTCAATGTGAACCAGAAGAAAAAGAATNCTAATTTCACTCT
TGTGGAAGAAGCCTTTGTGTCAAcagaaattcaaaaacttatttcaaaag
GGGTAATAGTTCAATGTGAACcagaagaaaaagaatttgTCTCCCCAATT
TTCACAGTACCAAAAACTGATGGTTGAAGAAGATTTATTTTGAATCTAAA
AAATCTTAATAAAAATGTTGAGTTTAAACACTTAAAAATGGATACTATTT
AAACCGTATTAGAAAATATCACTCCTAAATANAAAAATCTTAATAAAAAT
GTTGAGTTTAAACACTTTAAAATGGATACTATTAAAACTGTTTTAGAAAA
TATCACTCCTAAATGTTACATGGCATCCATGGATCTCAAAGATGCATATT
ACAGTGTTagaattgatgaaaaatatcaaagatttttaaaattttctttt
gatggaAGACTCTATAAATTTACCTGTTACCCGAATGGCCTCGGACCATG
TCCAAGGAAGTTTACAAAACTGAACAAACCTTTGCTGACAAAAAGGCCAT
TTTGTTGTTGAATTTATTGACgatttcttccttcaaggtcAAACATACAA
GGAATGTGAAAAAGGAGtcataaaatcaataaaactcTTCGATGGAGTTG
GTTATGTTATCCATCCAATAAAATCCCATTTAATACCATCAAATGAGATT
ACATATCTAGGTTTTGTGATTAATTCCATTGACATGACTGTTGAAATAAC
ACAGGAGAAAAAAGATGACATTTTGAGTTTTGNGTTATCCATCCAATAAA
ATCCCATTTAATACCATCAAATGAGATTACATATCTAGGTTTTGTGATTA
ATTCCATTGACATGACTGTTGAAATAACACAGGAGAAAAAAGATGACATT
TTGAGTTTTGCAGTTACCTTAATAGAATCCTTTCAAATATCTATCAGACA
ATTAGCTGGATTTATTGGTAAAATCGTTGCAACCTTTCCTGGCTCAACAT
ATGGGCCTTGTCTTCGAGAAAACAAAGACAATTTTGATGCTAAAATTAGG
CTCACTCCTGAATGTAAAATAGAATGCTCCTGGTGGAGAGATAAGGTCAT
GGACATGAAGA Run BLAST on NCBI transcript from alignment at sc0006479:9..1838- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044927 ID=TCONS_00044927|Name=TCONS_00044927|organism=Clytia hemisphaerica|type=transcript|length=1830bp|location=Sequence derived from alignment at sc0006479:9..1838- (Clytia hemisphaerica)
ATTGATATTACCAACAAAGTTGGTGGAAAAATAAAGAAGTACAACAACCG
ATCGTCTTACCAAAAGAAAGAATCCTATGACAGACAAGACAAATCTTACA
ATAAATCGCAGTCTTTTTTAGGACACGGCCGAAATTCCTGGCAACAAGGT
CGGAATAATTATCACAATCATCGTCATTCAAGCAACAACAACAACAACAG
AAATCAAAAGAGAAAAAACTAAAAGTGAGTTCTTTGAAAAACATCAAAGA
ACAAATTGAAGCATTGAATGATTACTTAACAGCCAAAGTTGAAAACTTTA
GTGGNCCTGGCAACAAGGTCGGAAGAATTATCACAATCATCGTCATTCAA
GCAACAACAACAACAACAGAAATCAAAAGAGAAAAAACTAAAAGTGAGTT
CTTTGAAAAACATCAAAGAACAAATTGAAGCATTGAATGATTACTTAACA
GCGAAAGTTGAAAACTTTAGTGCTGGACAACTCTCCAATCATTTAGAAGA
ATGGGAGAATTATACAAGTGATCCAGAAATTCTTCAAATTGTTCTTGGTG
ACACTATTAAATTTAACCATGATTTCTATTATCATTATTTCAATTTCACT
TNGTGACACTATTAAATTTAACCATGATTTCTATTATCAGCATTTTTGTA
AAAATGCTAATTTCACTCTTGTGGAAGAAGCCTTTGTGTCAACAAAAATT
CAAAAACTTATTTCAAAAGGGGTAATAGTTCAATGTGAACCAGAAGAAAA
AGAATNCTAATTTCACTCTTGTGGAAGAAGCCTTTGTGTCAACAGAAATT
CAAAAACTTATTTCAAAAGGGGTAATAGTTCAATGTGAACCAGAAGAAAA
AGAATTTGTCTCCCCAATTTTCACAGTACCAAAAACTGATGGTTGAAGAA
GATTTATTTTGAATCTAAAAAATCTTAATAAAAATGTTGAGTTTAAACAC
TTAAAAATGGATACTATTTAAACCGTATTAGAAAATATCACTCCTAAATA
NAAAAATCTTAATAAAAATGTTGAGTTTAAACACTTTAAAATGGATACTA
TTAAAACTGTTTTAGAAAATATCACTCCTAAATGTTACATGGCATCCATG
GATCTCAAAGATGCATATTACAGTGTTAGAATTGATGAAAAATATCAAAG
ATTTTTAAAATTTTCTTTTGATGGAAGACTCTATAAATTTACCTGTTACC
CGAATGGCCTCGGACCATGTCCAAGGAAGTTTACAAAACTGAACAAACCT
TTGCTGACAAAAAGGCCATTTTGTTGTTGAATTTATTGACGATTTCTTCC
TTCAAGGTCAAACATACAAGGAATGTGAAAAAGGAGTCATAAAATCAATA
AAACTCTTCGATGGAGTTGGTTATGTTATCCATCCAATAAAATCCCATTT
AATACCATCAAATGAGATTACATATCTAGGTTTTGTGATTAATTCCATTG
ACATGACTGTTGAAATAACACAGGAGAAAAAAGATGACATTTTGAGTTTT
GNGTTATCCATCCAATAAAATCCCATTTAATACCATCAAATGAGATTACA
TATCTAGGTTTTGTGATTAATTCCATTGACATGACTGTTGAAATAACACA
GGAGAAAAAAGATGACATTTTGAGTTTTGCAGTTACCTTAATAGAATCCT
TTCAAATATCTATCAGACAATTAGCTGGATTTATTGGTAAAATCGTTGCA
ACCTTTCCTGGCTCAACATATGGGCCTTGTCTTCGAGAAAACAAAGACAA
TTTTGATGCTAAAATTAGGCTCACTCCTGAATGTAAAATAGAATGCTCCT
GGTGGAGAGATAAGGTCATGGACATGAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044927-exon-sc0006479-1575043694:1691..1838 | TCONS_00044927-exon-sc0006479-1575043694:1691..1838 | Clytia hemisphaerica | exon |
| TCONS_00044927-exon-sc0006479-1575043694:9..1521 | TCONS_00044927-exon-sc0006479-1575043694:9..1521 | Clytia hemisphaerica | exon |
| TCONS_00044927-exon-sc0006479-1510915933:1691..1838 | TCONS_00044927-exon-sc0006479-1510915933:1691..1838 | Clytia hemisphaerica | exon |
| TCONS_00044927-exon-sc0006479-1510915933:9..1521 | TCONS_00044927-exon-sc0006479-1510915933:9..1521 | Clytia hemisphaerica | exon |
| TCONS_00044927-exon-sc0006479-1491911889:1691..1838 | TCONS_00044927-exon-sc0006479-1491911889:1691..1838 | Clytia hemisphaerica | exon |
| TCONS_00044927-exon-sc0006479-1491911889:9..1521 | TCONS_00044927-exon-sc0006479-1491911889:9..1521 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006479 | supercontig | sc0006479:9..1838 - |
Blast
The following BLAST results are available for this feature:
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