TCONS_00044890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044890
Unique NameTCONS_00044890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044890 ID=TCONS_00044890|Name=TCONS_00044890|organism=Clytia hemisphaerica|type=transcript|length=327bp
cAGTCTTATTAACCAACCATGGCTGCTATGTTACGAGCTCTTTCAAGACC
ATTGAATATGGCTGCAGGCGTAGGCGCCGCCGCATTAGGTTTGGCCGCCG
GTGCTATGGGATTCCCTGAAGCTGCTAATGATTGCAAGTCTACGGTGAAA
AAAGCCTACAGACAATTTATGCCGTGTATAGATTATCCTGATTTATCCAA
ACACAATAACTGCTTGAGTAAAGTGTTGACACCGCAAATGTATGCTAAAC
TTCGTGATCTGCAAACACCATCAGGTTATACACTTGACATGGCCATCCAA
ACAGGTGTCGACAATCCCGGACATCCG
Run BLAST on NCBI

protein sequence of TCONS_00044890-protein

>TCONS_00044890-protein ID=TCONS_00044890-protein|Name=TCONS_00044890-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MAAMLRALSRPLNMAAGVGAAALGLAAGAMGFPEAANDCKSTVKKAYRQF
MPCIDYPDLSKHNNCLSKVLTPQMYAKLRDLQTPSGYTLDMAIQTGVDNP
GHP
Run BLAST on NCBI

transcript from alignment at sc0006398:705..1894-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044890 ID=TCONS_00044890|Name=TCONS_00044890|organism=Clytia hemisphaerica|type=transcript|length=1190bp|location=Sequence derived from alignment at sc0006398:705..1894- (Clytia hemisphaerica)
CAGTCTTATTAACCAACCATGGCTGCTATGTTACGAGCTCTTTCAAGACC
ATTGAATATGGCTGCAGGCGTAGGCGCCGCCGCATTAGGTTTGGCCGCCG
GTGCTATGGGATTCCCTGAAGCTGCTAATGATTGCAAGTCTACGGTGAAA
AAAGCCTACAGACAATTTATGCCGTGTATAGATTATCCTGATTTATCCAA
ACACAATAACTGCTTGAGTAAAGTGTTGACACCGCAAATGTATGCTAAAC
TTCGTGATCTGGTAAGTTTGAAATCTCAAGATTTTCTTTTTCCTTATTCA
TAGTAGACCTTTCTGTAATTGAAAGTTTAGGACTAATGATTCAATACGAT
TATTCGCCTACTAATGATTCATCCAGAAGAGTTGTATTACAATTAAACAG
CAGGTTAGATTCTGGGAACAAATAAGTGCCATTGTGTATATTTCTTGTAT
TCTTAATGCTTATTTAAGGCGTGAAAAAAAACAACGAAATCTATCAAAAT
NGACTCCAGGGTTTCGGTAATATAAACACTAACCACATAAAATTCTTAAT
TTACAGTCTTATTAACCAACCATGGCTGCTATGTTACGAGCTCTTTCAAG
ACCATTGAATATGGCTGCAGGTGTAGGCGCCGCCTCATTAGGTTTGGCCG
CTGGTGCTATGGGATTCCCTGAAGCTGCTAATGATTGCAAGTCTACGGTG
AAAAAAGCCTACAGACAATTTATGCCGTGTATAGATTATCCTGATTTATC
CAAACACAATAACTGCTTGAGTAAAGTGTTGACACCGCAAATGTATGCTA
AACTTCGTGATCTGGTAAGTTTGAAATCTCAAGATTTTCTTTTTCCTTAT
TCATAGTAGACCTTTCTGTAATTGAAAGTTTAGGACTAATGATTCAATAC
GATTATTCGCCTACTAATGATTCATCCAGAAGAGTTGTATTACAATTAAA
CAGCAGGTTAGATTCTGGGAACAAATAAGTGCCATTGTGTATATTTCTTG
TATTCTTAATGCTTATTTAAGGCGTGAAAAAAAACAACGAAATCTATCAA
AATTAAAATGTAAAATTAAACTCGAAATCTATAGTATTTAATGTCCTGAA
TATATCGCCTGATTTTATATATAGCAAACACCATCAGGTTATACACTTGA
CATGGCCATCCAAACAGGTGTCGACAATCCCGGACATCCG

Coding sequence (CDS) from alignment at sc0006398:705..1894-

>TCONS_00044890 ID=TCONS_00044890|Name=TCONS_00044890|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at sc0006398:705..1894- (Clytia hemisphaerica)
CAAACACCATCAGGTTATACACTTGACATGGCCATCCAAACAGGTGTCGA
CAATCCCGGACATCCGATGGCTGCTATGTTACGAGCTCTTTCAAGACCAT
TGAATATGGCTGCAGGCGTAGGCGCCGCCGCATTAGGTTTGGCCGCCGGT
GCTATGGGATTCCCTGAAGCTGCTAATGATTGCAAGTCTACGGTGAAAAA
AGCCTACAGACAATTTATGCCGTGTATAGATTATCCTGATTTATCCAAAC
ACAATAACTGCTTGAGTAAAGTGTTGACACCGCAAATGTATGCTAAACTT
CGTGATCTGCAAACACCATCAGGTTATACACTTGACATGGCCATCCAAAC
AGGTGTCGACAATCCCGGACATCCGATGGCTGCTATGTTACGAGCTCTTT
CAAGACCATTGAATATGGCTGCAGGCGTAGGCGCCGCCGCATTAGGTTTG
GCCGCCGGTGCTATGGGATTCCCTGAAGCTGCTAATGATTGCAAGTCTAC
GGTGAAAAAAGCCTACAGACAATTTATGCCGTGTATAGATTATCCTGATT
TATCCAAACACAATAACTGCTTGAGTAAAGTGTTGACACCGCAAATGTAT
GCTAAACTTCGTGATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028489XLOC_028489Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044890-proteinTCONS_00044890-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044890-exon-sc0006398-1575043694:1634..1894TCONS_00044890-exon-sc0006398-1575043694:1634..1894Clytia hemisphaericaexon
TCONS_00044890-exon-sc0006398-1575043694:705..770TCONS_00044890-exon-sc0006398-1575043694:705..770Clytia hemisphaericaexon
TCONS_00044890-exon-sc0006398-1510915933:1634..1894TCONS_00044890-exon-sc0006398-1510915933:1634..1894Clytia hemisphaericaexon
TCONS_00044890-exon-sc0006398-1510915933:705..770TCONS_00044890-exon-sc0006398-1510915933:705..770Clytia hemisphaericaexon
TCONS_00044890-exon-sc0006398-1491911889:1634..1894TCONS_00044890-exon-sc0006398-1491911889:1634..1894Clytia hemisphaericaexon
TCONS_00044890-exon-sc0006398-1491911889:705..770TCONS_00044890-exon-sc0006398-1491911889:705..770Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006398supercontigsc0006398:705..1894 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.842027	0.333033	0	0.320381	0	0	0	0	0	0	0	0	0	0	0.225693	0.231328	0	0	0	0	0	0	1.29116	5.31861	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022413ATP-guanido_PTrfase_N
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0016772transferase activity, transferring phosphorus-containing groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016301 kinase activity
molecular_function GO:0016772 transferase activity, transferring phosphorus-containing groups
Blast
[Close]
BLAST of TCONS_00044890 vs. Swiss-Prot (Human)
Match: KCRS (Creatine kinase S-type, mitochondrial OS=Homo sapiens GN=CKMT2 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.403e-23
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  139 STVKKAYRQFMPCIDYPDLSKHNNCLSKVLTPQMYAKLRDLQTPSGYTLDMAIQTGVDNPGHP 327
            + V++  R F P  DYPDL KHNNC+++ LTP +YAKLR+  TP+GYTLD  IQTGVDNPGHP
Sbjct:   39 AEVREQPRLFPPSADYPDLRKHNNCMAECLTPAIYAKLRNKVTPNGYTLDQCIQTGVDNPGHP 101
The following BLAST results are available for this feature:
BLAST of TCONS_00044890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCRS2.403e-2363.49Creatine kinase S-type, mitochondrial OS=Homo sapi... [more]
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