TCONS_00044882 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044882
Unique NameTCONS_00044882
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044882 ID=TCONS_00044882|Name=TCONS_00044882|organism=Clytia hemisphaerica|type=transcript|length=348bp
TTAAAGGAACTTGTGCCAACAAACACGAAAATTGAATTGATCGATCGACT
TTCAGCAACTGGATTGCAAACAATCGAAGCTACCAGTTTTGTTTCACCCA
AATGGGTACCACAATTGGCGGATAACAAAGAACTGTTCACGAGAATCGAA
AAAAAAGATGGCGTCAGTTATCCTGTTTTAGTTCCAAACCTCAAAGGATA
TCAACAAGcaGTAGCATCAGGCGTCAAAGAGATCGCAGTCTTTGGAAGCG
CTTCTGAAGGATTCTCGCAAAAGAATATTAATTGTTCCATCGAAGAAAGT
TTGAAACGTTTTCAAAATGTGTTTGATGCATCCAAGAACGATGGAATC
Run BLAST on NCBI

protein sequence of TCONS_00044882-protein

>TCONS_00044882-protein ID=TCONS_00044882-protein|Name=TCONS_00044882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
LKELVPTNTKIELIDRLSATGLQTIEATSFVSPKWVPQLADNKELFTRIE
KKDGVSYPVLVPNLKGYQQAVASGVKEIAVFGSASEGFSQKNINCSIEES
LKRFQNVFDASKNDGI
Run BLAST on NCBI

transcript from alignment at sc0006386:434..1959+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044882 ID=TCONS_00044882|Name=TCONS_00044882|organism=Clytia hemisphaerica|type=transcript|length=1526bp|location=Sequence derived from alignment at sc0006386:434..1959+ (Clytia hemisphaerica)
TTAAAGGAACTTGTGCCAACAAACACGAAAATTGAATTGATCGATCGACT
TTCAGCAACTGGATTGCAAACAATCGAAGCTACCAGTTTTGTTTCACCCA
AATGGGTACCACAAGTAAGACAACTATACTTTCACCCCCCTAAGAGCTTA
AAAGGTGCTTCAAGAGATTCAAGTtcgattttttatcaatttatgtGAGG
ATCTTTTTAATTGTTTAGAATAGGACTAACATGGGGAGACTGCCTTATAa
ttcgtcgcatcaaaataaaaaagctttaagtccatttttgttgttttgag
aaaatcgaatttaaataatttttccttaaatcctgaaaaaacatttgaaa
tatttttgtgttagAAAAGCCATTAGTTCAAAATTGCTTCCACTCTGGAC
TTCAGGCTTTTTTGCCCTAAACTGATGTgaattaaggcttttttacccta
aaaataaagtgaaaagttAATTTCTTAAAATCAGGCCACTTTTGGTTGGT
TTTTGTTggatttgagccaaaaaatcgataaaaatggggtgtaaagcatc
ggtatggtcataactcaattttccaaaaaaatgtttttttgatgCGACGA
ATTGATTCGAACGGGAATTTCAATTTGctggaattacggaaattgttTTA
TAAGAGCATTAAGAGTTTCACCTCGAAGTGGTTTAGAAACTGGCCTGTAT
TAGAAAAAGATTCGAGTTGTACATATATTTAAAAACTCGAATATCACCTT
TTAAACATTTCAATCGGTACAGTTGGCGGATAACAAAGAACTGTTCACGA
GAATCGAAAAAAAAGATGGCGTCAGTTATCCTGTTTTAGTTCCAAACCTC
AAAGGATATCAACAAGcagtatgatttttttcttctattttctcTAGTCA
TCTGTTATTATTCTTGTAATTTAGGATATTTGATATCcttattcttaact
tttataTGTATTCATAAAGTTTTTGGGCTATTCCGGAGCCCcttatgttg
aggaggtcaATTTTGGGAAAGGTGACttcctggattttttttctcaattt
ctcaggacccccttggattttAGGACCCCCCTTGGATTTTGGGACCTACc
ttggtttttctttttctcatttttttttacAACCCTGGATTTCCGATATC
GTTTTACTTATCGTTTACCCTGCATTCTCAACCAAATTTTACTATcaccc
tggattttccacctcattttactgaccatcattctttcattCGAAAAACA
AGACCCCaatggattttttattttacagaccaacccccctccccccgttt
atttggcacctaagctAAGAGTACAGGATAGTATAGAATAACGCCAACCC
ATGGCAGCATTTCACTagaaaaacttttctcttgtTAGGTAGCATCAGGC
GTCAAAGAGATCGCAGTCTTTGGAAGCGCTTCTGAAGGATTCTCGCAAAA
GAATATTAATTGTTCCATCGAAGAAAGTTTGAAACGTTTTCAAAATGTGT
TTGATGCATCCAAGAACGATGGAATC

Coding sequence (CDS) from alignment at sc0006386:434..1959+

>TCONS_00044882 ID=TCONS_00044882|Name=TCONS_00044882|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at sc0006386:434..1959+ (Clytia hemisphaerica)
TTAAAGGAACTTGTGCCAACAAACACGAAAATTGAATTGATCGATCGACT
TTCAGCAACTGGATTGCAAACAATCGAAGCTACCAGTTTTGTTTCACCCA
AATGGGTACCACAATTGGCGGATAACAAAGAACTGTTCACGAGAATCGAA
AAAAAAGATGGCGTCAGTTATCCTGTTTTAGTTCCAAACCTCAAAGGATA
TCAACAAGcaGTAGCATCAGGCGTCAAAGAGATCGCAGTCTTTGGAAGCG
CTTCTGAAGGATTCTCGCAAAAGAATATTAATTGTTCCATCGAAGAAAGT
TTGAAACGTTTTCAAAATGTGTTTGATGCATCCAAGAACGATGGAATCTT
AAAGGAACTTGTGCCAACAAACACGAAAATTGAATTGATCGATCGACTTT
CAGCAACTGGATTGCAAACAATCGAAGCTACCAGTTTTGTTTCACCCAAA
TGGGTACCACAATTGGCGGATAACAAAGAACTGTTCACGAGAATCGAAAA
AAAAGATGGCGTCAGTTATCCTGTTTTAGTTCCAAACCTCAAAGGATATC
AACAAGcaGTAGCATCAGGCGTCAAAGAGATCGCAGTCTTTGGAAGCGCT
TCTGAAGGATTCTCGCAAAAGAATATTAATTGTTCCATCGAAGAAAGTTT
GAAACGTTTTCAAAATGTGTTTGATGCATCCAAGAACGATGGAATCTTAA
AGGAACTTGTGCCAACAAACACGAAAATTGAATTGATCGATCGACTTTCA
GCAACTGGATTGCAAACAATCGAAGCTACCAGTTTTGTTTCACCCAAATG
GGTACCACAATTGGCGGATAACAAAGAACTGTTCACGAGAATCGAAAAAA
AAGATGGCGTCAGTTATCCTGTTTTAGTTCCAAACCTCAAAGGATATCAA
CAAGcaGTAGCATCAGGCGTCAAAGAGATCGCAGTCTTTGGAAGCGCTTC
TGAAGGATTCTCGCAAAAGAATATTAATTGTTCCATCGAAGAAAGTTTGA
AACGTTTTCAAAATGTGTTTGATGCATCCAAGAACGATGGAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028484XLOC_028484Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044882-proteinTCONS_00044882-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044882-exon-sc0006386-1491911889:434..547TCONS_00044882-exon-sc0006386-1491911889:434..547Clytia hemisphaericaexon
TCONS_00044882-exon-sc0006386-1510915933:434..547TCONS_00044882-exon-sc0006386-1510915933:434..547Clytia hemisphaericaexon
TCONS_00044882-exon-sc0006386-1575043694:434..547TCONS_00044882-exon-sc0006386-1575043694:434..547Clytia hemisphaericaexon
TCONS_00044882-exon-sc0006386-1491911889:1206..1301TCONS_00044882-exon-sc0006386-1491911889:1206..1301Clytia hemisphaericaexon
TCONS_00044882-exon-sc0006386-1510915933:1206..1301TCONS_00044882-exon-sc0006386-1510915933:1206..1301Clytia hemisphaericaexon
TCONS_00044882-exon-sc0006386-1575043694:1206..1301TCONS_00044882-exon-sc0006386-1575043694:1206..1301Clytia hemisphaericaexon
TCONS_00044882-exon-sc0006386-1491911889:1822..1959TCONS_00044882-exon-sc0006386-1491911889:1822..1959Clytia hemisphaericaexon
TCONS_00044882-exon-sc0006386-1510915933:1822..1959TCONS_00044882-exon-sc0006386-1510915933:1822..1959Clytia hemisphaericaexon
TCONS_00044882-exon-sc0006386-1575043694:1822..1959TCONS_00044882-exon-sc0006386-1575043694:1822..1959Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006386supercontigsc0006386:434..1959 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.8868	21.9891	30.3028	19.8786	8.51354	6.99568	8.75573	10.9807	10.8817	9.87098	6.99411	10.9624	8.4031	12.7862	8.21059	14.6532	18.5212	17.2893	3.08325	4.27773	6.29104	11.0131	18.1135	8.70816	17.1034	21.1341	4.59245	5.63679	9.46035	8.99832
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013785Aldolase_TIM
IPR000891PYR_CT
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
Blast
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BLAST of TCONS_00044882 vs. Swiss-Prot (Human)
Match: HMGCL (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Homo sapiens GN=HMGCL PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.160e-41
Identity = 65/115 (56.52%), Postives = 86/115 (74.78%), Query Frame = 1 
Query:    4 KELVPTNTKIELIDRLSATGLQTIEATSFVSPKWVPQLADNKELFTRIEKKDGVSYPVLVPNLKGYQQAVASGVKEIAVFGSASEGFSQKNINCSIEESLKRFQNVFDASKNDGI 348
            K +V T  KI+LID LS  GL  IE TSFVSPKWVPQ+ D+ E+   I+K  G++YPVL PNLKG++ AVA+G KE+ +FG+ASE F++KNINCSIEES +RF  +  A+++  I
Sbjct:   48 KNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANI 162
The following BLAST results are available for this feature:
BLAST of TCONS_00044882 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMGCL1.160e-4156.52Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=... [more]
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