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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044859 ID=TCONS_00044859|Name=TCONS_00044859|organism=Clytia hemisphaerica|type=transcript|length=673bp
attttgagagaaaCGATGTTTCCAGCGAttgaaaaaagctggaaaagcag
gTTCTCAACAATTTCGCACGGAAAATTAATTATGCATGCGCATCATTAAG
TGATAATTATAATTCGTACGTCTttaaatacaattcaaaattcTAAATCA
TCCTCGCTATTGCATTCACTCAAATCACATTTTAACATACACACATGTCA
GAGAGATGGCTGATGGTGCTATTAATTACGAACAGTTGAAGGTGGTTGTG
AAAGAAATCATTCAAACAGAGTTGAGACCTCAAGTCTTAAACGTAGCAGA
AGAAAGAGCGCAACAAGTTGCAGATCAAACCTCTGTAACAAATTCAAATA
CATTAACAAAATTAAAGGAAAagcttgaaaataaaagaaaaagcgacAAT
GTTACTTTTTCAAAGGCTGGACACCTCGATCAGTTCAAACATAATACAGA
AGTTTTGGATAAGATTGATGATGCCCTTGAAGCTATCGAAACAACGGACG
TGGAAGGAATAACAACTGCTTTAAAGAAAGAGAGATTTTGGGAATTTGAG
CAATCTTCCGAAAGCGTCTCCGTTGCTGGtaaagctgggagcaaaccatc
aaacatggttcttcaaacatttgaactttcttgttgaATGGTTTGCGCGG
CATTTTCCAACATTGTCTCAAAC Run BLAST on NCBI protein sequence of TCONS_00044859-protein >TCONS_00044859-protein ID=TCONS_00044859-protein|Name=TCONS_00044859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MADGAINYEQLKVVVKEIIQTELRPQVLNVAEERAQQVADQTSVTNSNTL
TKLKEKLENKRKSDNVTFSKAGHLDQFKHNTEVLDKIDDALEAIETTDVE
GITTALKKERFWEFEQSSESVSVAGKAGSKPSNMVLQTFELSC Run BLAST on NCBI transcript from alignment at sc0006331:40..1488+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044859 ID=TCONS_00044859|Name=TCONS_00044859|organism=Clytia hemisphaerica|type=transcript|length=1449bp|location=Sequence derived from alignment at sc0006331:40..1488+ (Clytia hemisphaerica)
attttgagagaaaCGATGTTTCCAGCGAttgaaaaaagctggaaaagcag
gTTCTCAACAATTTCGCACGGAAAATTAATTATGCATGCGCATCATTAAG
TGATAATTATAATTCGTACGTCTttaaatacaattcaaaattcTAAATCA
TCCTCGCTATTGCATTCACTCAAATCACATTTTAACATACACACATGTCA
GAGAGATGGCTGATGGTGCTATTAATTACGAACAGTTGAAGGTGGTTGTG
AAAGAAATCATTCAAACAGAGTTGAGACCTCAAGTCTTAAACGTAGCAGA
AGAAAGAGCGCAACAAGTTGCAGATCAAACCTCTGTAACAAATTCAAATA
CATTAACAAAATTAAAGGAAAagcttgaaaataaaagaaaaagcgacAAT
GTTACTTTTTCAAAGGCTGGACACCTCGATCAGTTCAAACATAATACAGA
AGTTTTGGATAAGATTGATGATGCCCTTGAAGCTATCGAAACAACGGACG
TGGAAGGAATAACAACTGCTTTAAAGAAAGGTAAGCAATTACTTGAAACC
AGGATAAAGCATTTAAGGATCGCCGATGCCTACGGTTGGCTAACAGTTAA
GGAATTTAAAGCTAATGAATTGACATCTGGGGAGGCAGAGGAGTTAAAAG
ACTAAAGAGAGCAATAAAAAACGCAGAGATTGTCAAAGgccgtttttata
aaaaacaaaaactttccgATGATTCAGATTACAATAAAGTAATAAGAAAT
AAAACCGAACAAAGAAGTCGCATGGACGAAATAGTATGCTACTCCTGTAA
ACGTGTTGGACATTACGTATCGCACTGTCCCTTTTCGAATATAGTATCGC
CTTCGTCTCTCGCATATTCAACAAAATCACATTCATCGTcatcaacaaat
aaaaattcGTCAAGTTCTTCAAAAAGCTCGAGAGACGGTAAAAGTACCTC
CGGATAAAAATATTCGTTATCACTTTAAATTTCACAGTCAAGTTGCTTAC
TCGTGTTGAAAAATTGTGAAGCGTTATAATTCAAACGACTTTCCTTAGta
ttattttatcttttatgAACAATTAAATTCATTGTGCTTGACGTACTTTA
ATCAAAAGACAGTAATTTCGAATAATGAAATTCATTGTGTTTAATGTACT
TTAACCAAAGGACAGTCATTTCAATTTATTAAATTTATATACATGAACAA
CACTTAAACGTGTAGAATGTAATTCAAATTTGTGTAACATCGTTGTTTTC
TAAATAACTTTCGCCAATTTGATATCAagtttttgttcgttttttcgCTT
CTCCAGAGAGATTTTGGGAATTTGAGCAATCTTCCGAAAGCGTCTCCGTT
GCTGGtaaagctgggagcaaaccatcaaacatggttcttcaaacatttga
actttcttgttgaATGGTTTGCGCGGCATTTTCCAACATTGTCTCAAAC Coding sequence (CDS) from alignment at sc0006331:40..1488+ >TCONS_00044859 ID=TCONS_00044859|Name=TCONS_00044859|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at sc0006331:40..1488+ (Clytia hemisphaerica)
ATGGCTGATGGTGCTATTAATTACGAACAGTTGAAGGTGGTTGTGAAAGA
AATCATTCAAACAGAGTTGAGACCTCAAGTCTTAAACGTAGCAGAAGAAA
GAGCGCAACAAGTTGCAGATCAAACCTCTGTAACAAATTCAAATACATTA
ACAAAATTAAAGGAAAagcttgaaaataaaagaaaaagcgacAATGTTAC
TTTTTCAAAGGCTGGACACCTCGATCAGTTCAAACATAATACAGAAGTTT
TGGATAAGATTGATGATGCCCTTGAAGCTATCGAAACAACGGACGTGGAA
GGAATAACAACTGCTTTAAAGAAAGAGAGATTTTGGGAATTTGAGCAATC
TTCCGAAAGCGTCTCCGTTGCTGGtaaagctgggagcaaaccatcaaaca
tggttcttcaaacatttgaactttcttgttgaATGGCTGATGGTGCTATT
AATTACGAACAGTTGAAGGTGGTTGTGAAAGAAATCATTCAAACAGAGTT
GAGACCTCAAGTCTTAAACGTAGCAGAAGAAAGAGCGCAACAAGTTGCAG
ATCAAACCTCTGTAACAAATTCAAATACATTAACAAAATTAAAGGAAAag
cttgaaaataaaagaaaaagcgacAATGTTACTTTTTCAAAGGCTGGACA
CCTCGATCAGTTCAAACATAATACAGAAGTTTTGGATAAGATTGATGATG
CCCTTGAAGCTATCGAAACAACGGACGTGGAAGGAATAACAACTGCTTTA
AAGAAAGAGAGATTTTGGGAATTTGAGCAATCTTCCGAAAGCGTCTCCGT
TGCTGGtaaagctgggagcaaaccatcaaacatggttcttcaaacatttg
aactttcttgttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044859-exon-sc0006331-1491911889:40..569 | TCONS_00044859-exon-sc0006331-1491911889:40..569 | Clytia hemisphaerica | exon |
| TCONS_00044859-exon-sc0006331-1510915933:40..569 | TCONS_00044859-exon-sc0006331-1510915933:40..569 | Clytia hemisphaerica | exon |
| TCONS_00044859-exon-sc0006331-1575043694:40..569 | TCONS_00044859-exon-sc0006331-1575043694:40..569 | Clytia hemisphaerica | exon |
| TCONS_00044859-exon-sc0006331-1491911889:1346..1488 | TCONS_00044859-exon-sc0006331-1491911889:1346..1488 | Clytia hemisphaerica | exon |
| TCONS_00044859-exon-sc0006331-1510915933:1346..1488 | TCONS_00044859-exon-sc0006331-1510915933:1346..1488 | Clytia hemisphaerica | exon |
| TCONS_00044859-exon-sc0006331-1575043694:1346..1488 | TCONS_00044859-exon-sc0006331-1575043694:1346..1488 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006331 | supercontig | sc0006331:40..1488 + |
Blast
The following BLAST results are available for this feature:
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