|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044774 ID=TCONS_00044774|Name=TCONS_00044774|organism=Clytia hemisphaerica|type=transcript|length=1457bp
GTTCTCTGGGTCTACACTtttgttgtgtatgtggcatcttctgatgaaac
ttgagacccgctttcataaaaagcttttacgtatggctaggttatgagtt
tacgacaaatgaatttgtggaataaagaattgattttaaaccgcttAGTC
AGATTTGGTAAGTTTTAATTGTTCCCTGGGTCTACACAtttgttgtgtat
gtggcatatttagatgaaacttgagacccgctttcataaacaactttacg
tatggctagttaatgagtttacgacaaatgaatttgtggaatgaagaatt
gattttaaactgCTTAGTCAGATAACGTGTAAGTTATAATTGTTCTCTGG
GTCTACACATTTGctgtgtatgtggcatctttagatgaaacttgagaccc
gctttcataaaaagctttacgtatggctagtttatgagtttacgacaaat
gaatttgtggaataaagaattgattttaaaccgcttAGTCAGATGCGTGT
AAGTTTTAATTGTTCCCTGGGTCTACACATGTGATTGTGTATGCggcatc
ttttgatgaaacttgagacctgCTTTCATAAATAGCTTTTACGTTttggc
tagtttatgagtttacgacaaatgaatattttgaaactgTTAATTCgata
aatattttcatgttttattggtCTTCTTTTTTTGCAAGTATATCTTATGA
CAAAACTTAAGAACTTAATATGGCATGGGGATTGAAGATAGATCATTTTG
AAGAAGGTCAATTGATGTAGGTGTTGGGCTGTTTCTActgttataaagtt
ttttgtGCTGTCTGATGTTGAAAGACTTTGCTTTCTAAAGTgacttataa
ttttttttacccattttcagCACTTCAATTGGATGGTACATTCACTTTGC
TGGCTCGGAATTAGAGCTGTAATTCCTAAAAAGAGCTCCTTTGACGATGC
TTAGGTGAATTGATCAGTCAATATGGAACTCAAAATGGATGAATGCGATA
CTGCCAATGGAATAACGAACTAACAAAATTGGTGGACTATCATCTTTTTC
GAAATCTTGACGAACGCCAAAAACTCAGAAAGTTTTTCAAGCCACaacca
aaagaaatctttttttttaaataacaatgAATTTTATCCGATTCGAAGAA
GTCTTATTTTATTACCTTTCTGAAACTTAAGAATCGTTCACTAAAACATT
TTGAGAATCACGAGgcttatttatttaatttatttaaaagaCAACTCATT
TGAAAGAATATagtctttttatatattttaatttatttattcgcAGTAAT
ATATTTCCCATATCAATCTCTATCAACTAATCATTCTTAACATTTACAAG
TTATGGAGATCATTTTTGTCCTGTGCTTAAAAGATAAAGTCGTGACATGA
ATGTTCTGGTTCTTACAAAGAGTCCATCTTGAtgtattgtcatttttaaa
aacgATG Run BLAST on NCBI transcript from alignment at sc0006192:2..1778+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044774 ID=TCONS_00044774|Name=TCONS_00044774|organism=Clytia hemisphaerica|type=transcript|length=1777bp|location=Sequence derived from alignment at sc0006192:2..1778+ (Clytia hemisphaerica)
GTTCTCTGGGTCTACACTtttgttgtgtatgtggcatcttctgatgaaac
ttgagacccgctttcataaaaagcttttacgtatggctaggttatgagtt
tacgacaaatgaatttgtggaataaagaattgattttaaaccgcttAGTC
AGATTTGGTAAGTTTTAATTGTTCCCTGGGTCTACACAtttgttgtgtat
gtggcatatttagatgaaacttgagacccgctttcataaacaactttacg
tatggctagttaatgagtttacgacaaatgaatttgtggaatgaagaatt
gattttaaactgCTTAGTCAGATAACGTGTAAGTTATAATTGTTCTCTGG
GTCTACACATTTGctgtgtatgtggcatctttagatgaaacttgagaccc
gctttcataaaaagctttacgtatggctagtttatgagtttacgacaaat
gaatttgtggaataaagaattgattttaaaccgcttAGTCAGATGCGTGT
AAGTTTTAATTGTTCCCTGGGTCTACACATGTGATTGTGTATGCggcatc
ttttgatgaaacttgagacctgCTTTCATAAATAGCTTTTACGTTttggc
tagtttatgagtttacgacaaatgaatattttgaaactgTTAATTCgata
aatattttcatgttttattggtCTTCTTTTTTTGCAAGTATATCTTATGA
CAAAACTTAAGAACTTAATATGGCATGGGGATTGAAGATAGATCATTTTG
AAGAAGGTCAATTGATGTAGGTGTTGGGCTGTTTCTActgttataaagtt
ttttgtGCTGTCTGATGTTGAAAGACTTTGCTTTCTAAAGTgacttataa
ttttttttacccattttcagCACTTCAATTGGATGGTACATTCACTTTGC
TGGCTCGGAATTAGAGCTGTAATTCCTAAAAAGtaagacttttttaaatt
ttgtcttttcacaataaaattttttattccTTTCGAGAATATTGCTGTCT
TTCTTTCCAATGTTTAATTTGATGTCTATTTATTTTACTGTTTAAGtctt
taaagaaagtttttaaatgATTTGGATAGCCATTTATTTTCCAAGTAGAT
GGTAATCAAACTTATTAATTTCTTTATAGGAGCTCCTTTGACGATGCTTA
GGTGAATTGATCAGTCAATATGGAACTCAAAATGGATGAATGCGATACTG
CCAATGGAATAACGAACTAACAANNNNNNNNNNNNNNNNNNNNNNNTTAT
AGGAGCTCCTTTGACGATGCTTAGGTGAATTGATCAGTCAATATGGAACT
CAAAATGGATGAATGCGATACTGCCAATGGAATAACGAACTAACAAAATT
GGTGGACTATCATCTTTTTCGAAATCTTGACGAACGCCAAAAACTCAGAA
AGTTTTTCAAGCCACaaccaaaagaaatctttttttttaaataacaatgA
ATTTTATCCGATTCGAAGAAGTCTTATTTTATTACCTTTCTGAAACTTAA
GAATCGTTCACTAAAACATTTTGAGAATCACGAGgcttatttatttaatt
tatttaaaagaCAACTCATTTGAAAGAATATagtctttttatatatttta
atttatttattcgcAGTAATATATTTCCCATATCAATCTCTATCAACTAA
TCATTCTTAACATTTACAAGTTATGGAGATCATTTTTGTCCTGTGCTTAA
AAGATAAAGTCGTGACATGAATGTTCTGGTTCTTACAAAGAGTCCATCTT
GAtgtattgtcatttttaaaaacgATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044774-exon-sc0006192-1491911889:2..933 | TCONS_00044774-exon-sc0006192-1491911889:2..933 | Clytia hemisphaerica | exon |
| TCONS_00044774-exon-sc0006192-1510915933:2..933 | TCONS_00044774-exon-sc0006192-1510915933:2..933 | Clytia hemisphaerica | exon |
| TCONS_00044774-exon-sc0006192-1575043694:2..933 | TCONS_00044774-exon-sc0006192-1575043694:2..933 | Clytia hemisphaerica | exon |
| TCONS_00044774-exon-sc0006192-1491911889:1131..1152 | TCONS_00044774-exon-sc0006192-1491911889:1131..1152 | Clytia hemisphaerica | exon |
| TCONS_00044774-exon-sc0006192-1510915933:1131..1152 | TCONS_00044774-exon-sc0006192-1510915933:1131..1152 | Clytia hemisphaerica | exon |
| TCONS_00044774-exon-sc0006192-1575043694:1131..1152 | TCONS_00044774-exon-sc0006192-1575043694:1131..1152 | Clytia hemisphaerica | exon |
| TCONS_00044774-exon-sc0006192-1491911889:1276..1778 | TCONS_00044774-exon-sc0006192-1491911889:1276..1778 | Clytia hemisphaerica | exon |
| TCONS_00044774-exon-sc0006192-1510915933:1276..1778 | TCONS_00044774-exon-sc0006192-1510915933:1276..1778 | Clytia hemisphaerica | exon |
| TCONS_00044774-exon-sc0006192-1575043694:1276..1778 | TCONS_00044774-exon-sc0006192-1575043694:1276..1778 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006192 | supercontig | sc0006192:2..1778 + |
Blast
The following BLAST results are available for this feature:
|
