TCONS_00044731 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044731
Unique NameTCONS_00044731
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length285

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044731 ID=TCONS_00044731|Name=TCONS_00044731|organism=Clytia hemisphaerica|type=transcript|length=285bp
aGGCTTTCCTTGATTCAAATATTGGAAGGATCCAAGTTGAACTCTACAAA
GAAATTAAGAAGAATGGATCTTCGAGATCATTGAGAGCAGCCATGCAAAG
ATTCGGGGACACAAGTCACTTGATAAGAGCTCACAAACGCAGACCTTACG
TTGCAAATTTGCTTCCATGCATTGTGAAGATAGCAAAGAGGAATGATGAT
TCCATTCAAGAAAGTCTTGGTACTTTGTTGTCAAAAGTCATTCCTGTTCT
GGGGCCGTTCATGACTGAAGCTGATGTCAAGGTAA
Run BLAST on NCBI

transcript from alignment at sc0006106:353..1005-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044731 ID=TCONS_00044731|Name=TCONS_00044731|organism=Clytia hemisphaerica|type=transcript|length=653bp|location=Sequence derived from alignment at sc0006106:353..1005- (Clytia hemisphaerica)
AGGCTTTCCTTGATTCAAATATTGGAAGGATCCAAGTTGAACTCTACAAA
GAAATTAAGAAGGTAGGTATACACCATTTTCTTAAAAATTTCTAGAATTC
CTAAAAAAAGAATACGAAATTTGATTTCAAAAGAATTTGATTAATGGTTG
AATAAAGATGTTACATCTTTCTCAAGTCTTTTTTTGATTCCTTTTATTTT
GTAGAATGGATCTTCGAGATCATTGAGAGCAGCCATGCAAAGATTCGGGG
ACACAAGTCACTTGATAAGAGCTCACAAACGCAGGTACGCATCCTCGTCA
ATTTCATAATTATTTGACCTTTTTCTTTGCAATGTTTTTTGTTTTTTGTT
TTTTCAGAATTATATTACAAATTTGCTTCCACTATCGGTTTATTTTAAGT
AATCTATGTCTCCCCTAACAGCTAAAAATTAAGCAAGATACCAGTTGTTC
TCTGGTTGTAGTTTCAGTCCATGGCTCAGTCCATATATACACTTCTTTTT
CTTGTTCCAGACCTTACGTTGCAAATTTGCTTCCATGCATTGTGAAGATA
GCAAAGAGGAATGATGATTCCATTCAAGAAAGTCTTGGTACTTTGTTGTC
AAAAGTCATTCCTGTTCTGGGGCCGTTCATGACTGAAGCTGATGTCAAGG
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028345XLOC_028345Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044731-exon-sc0006106-1575043694:944..1005TCONS_00044731-exon-sc0006106-1575043694:944..1005Clytia hemisphaericaexon
TCONS_00044731-exon-sc0006106-1575043694:722..801TCONS_00044731-exon-sc0006106-1575043694:722..801Clytia hemisphaericaexon
TCONS_00044731-exon-sc0006106-1575043694:353..495TCONS_00044731-exon-sc0006106-1575043694:353..495Clytia hemisphaericaexon
TCONS_00044731-exon-sc0006106-1510915933:944..1005TCONS_00044731-exon-sc0006106-1510915933:944..1005Clytia hemisphaericaexon
TCONS_00044731-exon-sc0006106-1510915933:722..801TCONS_00044731-exon-sc0006106-1510915933:722..801Clytia hemisphaericaexon
TCONS_00044731-exon-sc0006106-1510915933:353..495TCONS_00044731-exon-sc0006106-1510915933:353..495Clytia hemisphaericaexon
TCONS_00044731-exon-sc0006106-1491911889:944..1005TCONS_00044731-exon-sc0006106-1491911889:944..1005Clytia hemisphaericaexon
TCONS_00044731-exon-sc0006106-1491911889:722..801TCONS_00044731-exon-sc0006106-1491911889:722..801Clytia hemisphaericaexon
TCONS_00044731-exon-sc0006106-1491911889:353..495TCONS_00044731-exon-sc0006106-1491911889:353..495Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006106supercontigsc0006106:353..1005 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.10879	0.575975	3.97566	4.81578	22.371	13.9713	13.116	11.1628	6.9432	5.24637	2.58242	6.98743	6.25845	8.87743	4.5589	5.77852	3.11326	4.00125	3.06145	5.91269	4.93266	3.32247	3.67415	2.05188	15.3349	11.973	2.26767	2.43981	2.06168	2.10352
Blast
[Close]
BLAST of TCONS_00044731 vs. Swiss-Prot (Human)
Match: HD (Huntingtin OS=Homo sapiens GN=HTT PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 9.514e-29
Identity = 47/94 (50.00%), Postives = 70/94 (74.47%), Query Frame = 3 
Query:    3 AFLDSNIGRIQVELYKEIKKNGSSRSLRAAMQRFGDTSHLIRAHKRRPYVANLLPCIVKIAKRNDDSIQESLGTLLSKVIPVLGPFMTEADVKV 284
            A +DSN+ R+Q+ELYKEIKKNG+ RSLRAA+ RF + +HL+R  K RPY+ NLLPC+ + +KR ++S+QE+L   + K++   G F  + ++KV
Sbjct:  157 ALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNEIKV 250
The following BLAST results are available for this feature:
BLAST of TCONS_00044731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HD9.514e-2950.00Huntingtin OS=Homo sapiens GN=HTT PE=1 SV=2[more]
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