TCONS_00044666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044666
Unique NameTCONS_00044666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length261

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044666 ID=TCONS_00044666|Name=TCONS_00044666|organism=Clytia hemisphaerica|type=transcript|length=261bp
TGGTCGATAGATACAATTGGTTGAGTGATCGATTAATTCGGTTGAGTGAT
CGATTAATTTGGTTGAGTTGGATTTGATTGGATTGGTTGGATGATCTGAG
TCTGTTTGAATGTTGTCTATCGGGTGCTTCACAGACTATCACAAATAGGT
GCTTGGAACCATTTATTGAGAGAGGGTGAAACAGAGTGGCCAGAAGTGAC
AGCTGGAAGCTGACCAAGATGGCTGAAAGCCAAATGACTATGTCCAAACG
TAGACAAAGTC
Run BLAST on NCBI

transcript from alignment at sc0005967:1222..1482

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044666 ID=TCONS_00044666|Name=TCONS_00044666|organism=Clytia hemisphaerica|type=transcript|length=261bp|location=Sequence derived from alignment at sc0005967:1222..1482 (Clytia hemisphaerica)
GACTTTGTCTACGTTTGGACATAGTCATTTGGCTTTCAGCCATCTTGGTC
AGCTTCCAGCTGTCACTTCTGGCCACTCTGTTTCACCCTCTCTCAATAAA
TGGTTCCAAGCACCTATTTGTGATAGTCTGTGAAGCACCCGATAGACAAC
ATTCAAACAGACTCAGATCATCCAACCAATCCAATCAAATCCAACTCAAC
CAAATTAATCGATCACTCAACCGAATTAATCGATCACTCAACCAATTGTA
TCTATCGACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028282XLOC_028282Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044666-exon-sc0005967-1491911889:1222..1482TCONS_00044666-exon-sc0005967-1491911889:1222..1482Clytia hemisphaericaexon
TCONS_00044666-exon-sc0005967-1510915933:1222..1482TCONS_00044666-exon-sc0005967-1510915933:1222..1482Clytia hemisphaericaexon
TCONS_00044666-exon-sc0005967-1575043694:1222..1482TCONS_00044666-exon-sc0005967-1575043694:1222..1482Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005967supercontigsc0005967:1222..1482 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.69167	4.62961	0	0.985951	4.36011	0.689083	3.3254	3.1132	1.08981	1.34991	1.31025	1.29196	0	1.33985	0.36718	0.788081	1.9417	0.497546	0	2.8772	0.670413	1.82971	1.48284	0.75203	0.694262	1.23922	0	0.946271	3.58857	0.731236
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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