TCONS_00044664 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00044664
Unique Name	TCONS_00044664
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	760

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0005964:37..2771+
coding sequence from alignment at sc0005964:37..2771+

transcript sequence

>TCONS_00044664 ID=TCONS_00044664|Name=TCONS_00044664|organism=Clytia hemisphaerica|type=transcript|length=760bp
ATAGTGTTACATATTAGTGACATTGTACAAGGGAATGTTATCGAAGATGA
AGACAAAGAATACTTCCTACTTCTTCAGAAAAACTTTTCTGGACATGACG
ACTTGGAGACACTGATAAAACGTTCAATCAACAAAATTAATACACAACAA
CAAGGGAATGAAGGAATTTGGCTAAGTCTCCAAAAGCTTCATGGTGACTT
ACAGCAGGTCAAAGATGAGCATCCATTATTGGTAAATCATTCGACAGCCA
TTGCTAGAAAACAAGGCTTTCCTGATGTTATCATGCCAGgTGACATTCGT
AATGACATGTATTTAACATTGGTATCTGGAGTCTTTGATAAAGGGCGAAA
AACATCTTTGAACATGCAAGTTATTGTTGGAGTTTACGATTCTAATGGCA
AACTTTTGAATGAAGTTATTTCATTAGGTGCCGGTGAACCTCTTGTTAAA
GAATACCTCTCCACCATCAACTACCACAGTGAACAACCGAAGTGGGGAGA
AACTGTTAAATTTGTTCTACCAATCGATAAAGTGAACGGATGTCATGTTA
GATTCTCATTCAAACACAGGGCTACTTTAGAAGGTAAGactttcttttct
tcatttAGATATTCCTTTGTTGTCATTTTaccagtgtagctggaacctcg
atattccaggattagaaaaagctatacctgttatattttttctttaaaga
atcaacaagccatcaacatcgataaattacacacatttcctcagaaactt
ttaaaattat

Run BLAST on NCBI

protein sequence of TCONS_00044664-protein

>TCONS_00044664-protein ID=TCONS_00044664-protein|Name=TCONS_00044664-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
IVLHISDIVQGNVIEDEDKEYFLLLQKNFSGHDDLETLIKRSINKINTQQ
QGNEGIWLSLQKLHGDLQQVKDEHPLLVNHSTAIARKQGFPDVIMPGDIR
NDMYLTLVSGVFDKGRKTSLNMQVIVGVYDSNGKLLNEVISLGAGEPLVK
EYLSTINYHSEQPKWGETVKFVLPIDKVNGCHVRFSFKHRATLEGKTFFS
SFRYSFVVILPV

Run BLAST on NCBI

transcript from alignment at sc0005964:37..2771+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00044664 ID=TCONS_00044664|Name=TCONS_00044664|organism=Clytia hemisphaerica|type=transcript|length=2735bp|location=Sequence derived from alignment at sc0005964:37..2771+ (Clytia hemisphaerica)
ATAGTGTTACATATTAGTGACATTGTACAAGGGAATGTTATCGAAGATGA
AGACAAAGAATACTTCCTACTTCTTCAGAAAAAGTGAGAGACAAATAAGC
TATTGTTTAAcctttgattgaaaaattattgttttaatgCTGATTCATAT
GGTTTTATTAGCGATTTTATAGGTATTACATTAAGTAGAGTTTCTATATA
CCAGAGTTGTAATTTACCAACAAAATAGATCAATCAAAGAAACACTATTG
TATTATAATGTTATCATTTCCATGACATCACCTTCCAAATTATTGAAATT
ACTTTTCTTCAATTGTGTAGCTTTTCTGGACATGACGACTTGGAGACACT
GATAAAACGTTCAATCAACAAAATTAATACACAACAACAAGGGAATGAAG
GTACAAGACTTATAGTTACCCAGTATGATAAATTGttgtattgaaatttt
cattttgatgtaACAAAGTTCTAACTCTGTTGCATTTGTTTTCATCTAAA
TGGTAATTATCTTTCAGGAATTTGGCTAAGTCTCCAAAAGCTTCATGGTG
ACTTACAGCAGGTATTCCTCTTACCTTTTATCTcatcttttgtattttta
ttctaaaaattgaAGAGGCTAGTGCTCGTTTTAGGTTTCTCCTTTAAAGT
TCATAAGAATTCTAACGTCTGCAGACATCTCTTGTATCAGAATTCTTTTA
TTACTTTTCTTAGTCTTTGAATTATTGCCTTGTCAAACACTTTTCACCAT
CCTGAATTGTTAGCTTTTTTTGTCAATGCTCACAATAGAGTAGTGTAGTA
GAATGGCTCTTATTTATAGGTCAAAGATGAGCATCCATTATTGGTAAATC
ATTCGACAGCCATTGCTAGAAAACAAGGCTTTCCTGATGTTATCATGCCA
GGTATATAGTGCCTTACTTCAAATATCATAATTTAACTGCTTATCGTCAT
TGTCAAAGCAGGAGGAACAATCTCAAAATGAATCTCTCAGTATATTGAGA
ATCTTTCTGTATAAGATGAACCTTTGACAATTACATTGACCCTTTCGTCT
TACAGAGGAGAGATTCATCCACATGACCCAAGGCCAATCTCGTTTTCAAA
GGTTTATCTTACAGAAAATTCTCTCTTTCCTAAGATGCTAATTTGAGATT
TGCCCTTTTGTCTTAACAAGGACAATATGATGCTAACCTACCTTGAATGT
ATTAGATTTATGTACTTGGTTTGCCATCAGTTCAAGTTGGAAGGTCTTGT
ATAGAATATTTTCTCAGAAACAGGTGTAAGCCTTAgtgtggagaggctga
agtatATAATAGAGCTTAGAACTTAGACATGCACCATCCATTGCTTTTGT
TAtatcttcttaattttttcaggTGACATTCGTAATGACATGTATTTAAC
ATTGGTATCTGGAGTCTTTGATAAAGGGCGAAAAACATCTTTGAACATGC
AAGTTATTGTTGGAGTTTACGATTCTAATGGCAAACTTTTGAATGTAAGC
AGCTCACCATCTTTAAATTAAATGaggaatattttattttctttggtaTA
AGTAatgaaaggcttcaaaaacaaTAAAGTAGTTGTTATTGATTTAAGTA
AGCAattctgcgaccgcagtcggaggcgacccgaaggctcctctttcgat
agctatctacccgaaggtaggggagggtgccactctttctccctggattg
ttccacttacccttgatccttctctcaCTTGCTGAttatcaagcagagag
gcaccaagtaccattttgagaatcttttgtATAACCctgctgggggttga
acccacagcCTTGCAAACCGTAGCAGGATGGTAGAGCCACTGCACCACGG
TTCACTATTGATTTAAGCTTATGATTCTTCNCCGTAGCAGGATGGTAGAG
CCACTGCACCACGGTTCACTATTGATTTAAGCTTATGATTCTTCCTGGGT
TAATTTTATAGATAGCCAGAAAGATTAGCCATGGTCTCTCTGAGAAACAT
tggtaaaatttccaaaaaagtttAAGATTACAGGGCTATACACCAAATTT
atgatttcattttctttacttcCTTTCTCAAATTAGACTGCTTTCTAAAT
CATACCAATATAATGGTAACTTTGTACACAAAAAGTGGTACATcccaatt
atttttaaattaccAAACCCAAAATCTCCAGCTGATAACTTATTATTAAC
ATATTCCCTGTTGTTCTTTTTCAGGAAGTTATTTCATTAGGTGCCGGTGA
ACCTCTTGTTAAAGAATACCTCTCCACCATCAACTACCACAGTGAACAAC
CGAAGTGGGGAGAAACTGTTAAAGTAAGAATGAAGTACTCTTAAATTGTT
GATCTGATAGCCCAACACAAAGCTTTTTCCAAGGCCTTCTAAGACCCTgg
gtttttacaaaatttctgctTTCCCTGTATCTTACTTCAACTTTGGAATT
ATTATCCAGTTGTTTAGTATCTATTTTCTTCATAGTTTGTTCTACCAATC
GATAAAGTGAACGGATGTCATGTTAGATTCTCATTCAAACACAGGGCTAC
TTTAGAAGGTAAGactttcttttcttcatttAGATATTCCTTTGTTGTCA
TTTTaccagtgtagctggaacctcgatattccaggattagaaaaagctat
acctgttatattttttctttaaagaatcaacaagccatcaacatcgataa
attacacacatttcctcagaaacttttaaaattat

Coding sequence (CDS) from alignment at sc0005964:37..2771+

>TCONS_00044664 ID=TCONS_00044664|Name=TCONS_00044664|organism=Clytia hemisphaerica|type=CDS|length=4473bp|location=Sequence derived from alignment at sc0005964:37..2771+ (Clytia hemisphaerica)
ATAGTGTTACATATTAGTGACATTGTACAAGGGAATGTTATCGAAGATGA
AGACAAAGAATACTTCCTACTTCTTCAGAAAAACTTTTCTGGACATGACG
ACTTGGAGACACTGATAAAACGTTCAATCAACAAAATTAATACACAACAA
CAAGGGAATGAAGGAATTTGGCTAAGTCTCCAAAAGCTTCATGGTGACTT
ACAGCAGGTCAAAGATGAGCATCCATTATTGGTAAATCATTCGACAGCCA
TTGCTAGAAAACAAGGCTTTCCTGATGTTATCATGCCAGgTGACATTCGT
AATGACATGTATTTAACATTGGTATCTGGAGTCTTTGATAAAGGGCGAAA
AACATCTTTGAACATGCAAGTTATTGTTGGAGTTTACGATTCTAATGGCA
AACTTTTGAATGAAGTTATTTCATTAGGTGCCGGTGAACCTCTTGTTAAA
GAATACCTCTCCACCATCAACTACCACAGTGAACAACCGAAGTGGGGAGA
AACTGTTAAATTTGTTCTACCAATCGATAAAGTGAACGGATGTCATGTTA
GATTCTCATTCAAACACAGGGCTACTTTAGAAGGTAAGactttcttttct
tcatttAGATATTCCTTTGTTGTCATTTTaccagtgtagATAGTGTTACA
TATTAGTGACATTGTACAAGGGAATGTTATCGAAGATGAAGACAAAGAAT
ACTTCCTACTTCTTCAGAAAAACTTTTCTGGACATGACGACTTGGAGACA
CTGATAAAACGTTCAATCAACAAAATTAATACACAACAACAAGGGAATGA
AGGAATTTGGCTAAGTCTCCAAAAGCTTCATGGTGACTTACAGCAGGTCA
AAGATGAGCATCCATTATTGGTAAATCATTCGACAGCCATTGCTAGAAAA
CAAGGCTTTCCTGATGTTATCATGCCAGgTGACATTCGTAATGACATGTA
TTTAACATTGGTATCTGGAGTCTTTGATAAAGGGCGAAAAACATCTTTGA
ACATGCAAGTTATTGTTGGAGTTTACGATTCTAATGGCAAACTTTTGAAT
GAAGTTATTTCATTAGGTGCCGGTGAACCTCTTGTTAAAGAATACCTCTC
CACCATCAACTACCACAGTGAACAACCGAAGTGGGGAGAAACTGTTAAAT
TTGTTCTACCAATCGATAAAGTGAACGGATGTCATGTTAGATTCTCATTC
AAACACAGGGCTACTTTAGAAGGTAAGactttcttttcttcatttAGATA
TTCCTTTGTTGTCATTTTaccagtgtagATAGTGTTACATATTAGTGACA
TTGTACAAGGGAATGTTATCGAAGATGAAGACAAAGAATACTTCCTACTT
CTTCAGAAAAACTTTTCTGGACATGACGACTTGGAGACACTGATAAAACG
TTCAATCAACAAAATTAATACACAACAACAAGGGAATGAAGGAATTTGGC
TAAGTCTCCAAAAGCTTCATGGTGACTTACAGCAGGTCAAAGATGAGCAT
CCATTATTGGTAAATCATTCGACAGCCATTGCTAGAAAACAAGGCTTTCC
TGATGTTATCATGCCAGgTGACATTCGTAATGACATGTATTTAACATTGG
TATCTGGAGTCTTTGATAAAGGGCGAAAAACATCTTTGAACATGCAAGTT
ATTGTTGGAGTTTACGATTCTAATGGCAAACTTTTGAATGAAGTTATTTC
ATTAGGTGCCGGTGAACCTCTTGTTAAAGAATACCTCTCCACCATCAACT
ACCACAGTGAACAACCGAAGTGGGGAGAAACTGTTAAATTTGTTCTACCA
ATCGATAAAGTGAACGGATGTCATGTTAGATTCTCATTCAAACACAGGGC
TACTTTAGAAGGTAAGactttcttttcttcatttAGATATTCCTTTGTTG
TCATTTTaccagtgtagATAGTGTTACATATTAGTGACATTGTACAAGGG
AATGTTATCGAAGATGAAGACAAAGAATACTTCCTACTTCTTCAGAAAAA
CTTTTCTGGACATGACGACTTGGAGACACTGATAAAACGTTCAATCAACA
AAATTAATACACAACAACAAGGGAATGAAGGAATTTGGCTAAGTCTCCAA
AAGCTTCATGGTGACTTACAGCAGGTCAAAGATGAGCATCCATTATTGGT
AAATCATTCGACAGCCATTGCTAGAAAACAAGGCTTTCCTGATGTTATCA
TGCCAGgTGACATTCGTAATGACATGTATTTAACATTGGTATCTGGAGTC
TTTGATAAAGGGCGAAAAACATCTTTGAACATGCAAGTTATTGTTGGAGT
TTACGATTCTAATGGCAAACTTTTGAATGAAGTTATTTCATTAGGTGCCG
GTGAACCTCTTGTTAAAGAATACCTCTCCACCATCAACTACCACAGTGAA
CAACCGAAGTGGGGAGAAACTGTTAAATTTGTTCTACCAATCGATAAAGT
GAACGGATGTCATGTTAGATTCTCATTCAAACACAGGGCTACTTTAGAAG
GTAAGactttcttttcttcatttAGATATTCCTTTGTTGTCATTTTacca
gtgtagATAGTGTTACATATTAGTGACATTGTACAAGGGAATGTTATCGA
AGATGAAGACAAAGAATACTTCCTACTTCTTCAGAAAAACTTTTCTGGAC
ATGACGACTTGGAGACACTGATAAAACGTTCAATCAACAAAATTAATACA
CAACAACAAGGGAATGAAGGAATTTGGCTAAGTCTCCAAAAGCTTCATGG
TGACTTACAGCAGGTCAAAGATGAGCATCCATTATTGGTAAATCATTCGA
CAGCCATTGCTAGAAAACAAGGCTTTCCTGATGTTATCATGCCAGgTGAC
ATTCGTAATGACATGTATTTAACATTGGTATCTGGAGTCTTTGATAAAGG
GCGAAAAACATCTTTGAACATGCAAGTTATTGTTGGAGTTTACGATTCTA
ATGGCAAACTTTTGAATGAAGTTATTTCATTAGGTGCCGGTGAACCTCTT
GTTAAAGAATACCTCTCCACCATCAACTACCACAGTGAACAACCGAAGTG
GGGAGAAACTGTTAAATTTGTTCTACCAATCGATAAAGTGAACGGATGTC
ATGTTAGATTCTCATTCAAACACAGGGCTACTTTAGAAGGTAAGactttc
ttttcttcatttAGATATTCCTTTGTTGTCATTTTaccagtgtagATAGT
GTTACATATTAGTGACATTGTACAAGGGAATGTTATCGAAGATGAAGACA
AAGAATACTTCCTACTTCTTCAGAAAAACTTTTCTGGACATGACGACTTG
GAGACACTGATAAAACGTTCAATCAACAAAATTAATACACAACAACAAGG
GAATGAAGGAATTTGGCTAAGTCTCCAAAAGCTTCATGGTGACTTACAGC
AGGTCAAAGATGAGCATCCATTATTGGTAAATCATTCGACAGCCATTGCT
AGAAAACAAGGCTTTCCTGATGTTATCATGCCAGgTGACATTCGTAATGA
CATGTATTTAACATTGGTATCTGGAGTCTTTGATAAAGGGCGAAAAACAT
CTTTGAACATGCAAGTTATTGTTGGAGTTTACGATTCTAATGGCAAACTT
TTGAATGAAGTTATTTCATTAGGTGCCGGTGAACCTCTTGTTAAAGAATA
CCTCTCCACCATCAACTACCACAGTGAACAACCGAAGTGGGGAGAAACTG
TTAAATTTGTTCTACCAATCGATAAAGTGAACGGATGTCATGTTAGATTC
TCATTCAAACACAGGGCTACTTTAGAAGGTAAGactttcttttcttcatt
tAGATATTCCTTTGTTGTCATTTTaccagtgtagATAGTGTTACATATTA
GTGACATTGTACAAGGGAATGTTATCGAAGATGAAGACAAAGAATACTTC
CTACTTCTTCAGAAAAACTTTTCTGGACATGACGACTTGGAGACACTGAT
AAAACGTTCAATCAACAAAATTAATACACAACAACAAGGGAATGAAGGAA
TTTGGCTAAGTCTCCAAAAGCTTCATGGTGACTTACAGCAGGTCAAAGAT
GAGCATCCATTATTGGTAAATCATTCGACAGCCATTGCTAGAAAACAAGG
CTTTCCTGATGTTATCATGCCAGgTGACATTCGTAATGACATGTATTTAA
CATTGGTATCTGGAGTCTTTGATAAAGGGCGAAAAACATCTTTGAACATG
CAAGTTATTGTTGGAGTTTACGATTCTAATGGCAAACTTTTGAATGAAGT
TATTTCATTAGGTGCCGGTGAACCTCTTGTTAAAGAATACCTCTCCACCA
TCAACTACCACAGTGAACAACCGAAGTGGGGAGAAACTGTTAAATTTGTT
CTACCAATCGATAAAGTGAACGGATGTCATGTTAGATTCTCATTCAAACA
CAGGGCTACTTTAGAAGGTAAGactttcttttcttcatttAGATATTCCT
TTGTTGTCATTTTaccagtgtag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_028280	XLOC_028280	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00044664-protein	TCONS_00044664-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0005964	supercontig	sc0005964:37..2771 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.30089	9.55312	5.58447	6.39157	23.4586	18.8455	21.7373	25.7817	13.7633	18.781	11.3066	11.2817	19.0941	13.3178	15.2438	17.2776	19.7004	26.6338	14.0102	21.457	22.2026	22.8388	10.7797	16.0768	16.963	15.4702	17.142	12.743	11.357	14.034

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR027007	DHR-1_domain
IPR032376	DOCK_N

Blast

[Close]

BLAST of TCONS_00044664 vs. Swiss-Prot (Human)
Match: DOCK1 (Dedicator of cytokinesis protein 1 OS=Homo sapiens GN=DOCK1 PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 6.788e-54
Identity = 92/196 (46.94%), Postives = 137/196 (69.90%), Query Frame = 1

Query:    4 VLHISDIVQGNVIEDEDKEYFLLLQKNFSGHDDLETLIKRSINKINTQQQGNEGIWLSLQKLHGDLQQVKDEHPLLVNHSTAIARKQGFPDVIMPGDIRNDMYLTLVSGVFDKGRKTSL-NMQVIVGVYDSNGKLLNEVISLGAGEPLVKEYLSTINYHSEQPKWGETVKFVLPIDKVNGCHVRFSFKHRATLEGK 588
            V+ ++DI+ G V +DEDK++F+  Q     +D L+T+I + I       +G +G+W++L+ L GD+ Q++ E P LV+ +TA+ARK GFP++IMPGD+RND+Y+TLV G FDKG KT+  N++V V VYD +GK L  VI  GAG+  + EY S I Y  +QP+W ETVK  +PI+ VN  H+RF+F+HR++ + K
Sbjct:  329 VMDVTDIINGKV-DDEDKQHFIPFQPVAGENDFLQTVINKVIAAKEVNHKG-QGLWVTLKLLPGDIHQIRKEFPHLVDRTTAVARKTGFPEIIMPGDVRNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSK 522

The following BLAST results are available for this feature:

BLAST of TCONS_00044664 vs. Swiss-Prot (Human)

BLAST of TCONS_00044664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DOCK1	6.788e-54	46.94	Dedicator of cytokinesis protein 1 OS=Homo sapiens...	[more]

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TCONS_00044664 (transcript) - C. hemisphaerica