TCONS_00044655 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044655
Unique NameTCONS_00044655
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length941

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044655 ID=TCONS_00044655|Name=TCONS_00044655|organism=Clytia hemisphaerica|type=transcript|length=941bp
ACATTATTAAGAAAGAGAGTATTTCTTTATCAATATTCAAAGTTTCATGC
TCTTCACAATATGTATCAGTTTAGCGAATTCCTTATATTTGAGGACCTTT
TCTCCCTGCTGATCTTTATTTAATCTACTGGATCGAGAAAATAAAAACGA
TCTAGTGAGCAGAAGTCCCTATTTATAGGGACGTCCTTAAATATAGGGTA
TCGTGTGGTAGTTTATGATGGACCAATGCAATACAACTCTTGTCTTGTAC
TTCATTGCGAAGAAGGTCAAAGTCTAAAGAACAAATACATTCTTATTCAA
TCAAGGTTACGATGGACCAATGCCCGAAGAAGATGCACAATATGATGAAG
AAATGTACCATGATAGTTTAAGCTGCAAGGATAAATATTCAAATTGTCCA
ACTACTTTGCGTCAACATTGCGGAAGTACTGTGCACACTTTTGTGAAGAC
GGATTGGTGCCGGAAAACATGTGGTGATTGCTCACCAGATCCAGCTCCTG
CTTATGTGACAGCTCAACCAAAAATTTCAAGCTCAGAGATGGAGAGTATC
AAAGCAACTTGTTTGGCAGCTCACAATACAAAAAGGAGACTCCACAAAAA
CACACCCTCAATGACATATGACATGGATCTTGCAAAACGAGCTCAAACCT
ACGCAGAATATCTCCTGGAATTTGACGAGTGGAAACACGATCCCTTTCGA
AAATACAATGGCTACGAATCTGGAGTCGGTGAAAATCTTTACTGGTCATC
TTCAGCAAGTCGAACCTCTACTAACGCTGTTGTTTCATGGTATAATGAAA
TCAATAACTACAATTTTGGAACTGGCAAGTCAAATGGTGGAGTTATTGGC
CATTTCACACAATTAGTTTGGGATTCTTCAACTAAATTGGGTTGCGGTGT
TGCTAAAGGAACAGGTGGAACTTACGTCGTTTCCAGATATT
Run BLAST on NCBI

protein sequence of TCONS_00044655-protein

>TCONS_00044655-protein ID=TCONS_00044655-protein|Name=TCONS_00044655-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MPEEDAQYDEEMYHDSLSCKDKYSNCPTTLRQHCGSTVHTFVKTDWCRKT
CGDCSPDPAPAYVTAQPKISSSEMESIKATCLAAHNTKRRLHKNTPSMTY
DMDLAKRAQTYAEYLLEFDEWKHDPFRKYNGYESGVGENLYWSSSASRTS
TNAVVSWYNEINNYNFGTGKSNGGVIGHFTQLVWDSSTKLGCGVAKGTGG
TYVVSRY
Run BLAST on NCBI

transcript from alignment at sc0005949:1..2872-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044655 ID=TCONS_00044655|Name=TCONS_00044655|organism=Clytia hemisphaerica|type=transcript|length=2872bp|location=Sequence derived from alignment at sc0005949:1..2872- (Clytia hemisphaerica)
ACATTATTAAGAAAGAGAGTATTTCTTTATCAATATTCAAAGTTTCATGC
TCTTCACAATATGTATCAGTTTAGCGAATTCCTTATATTTGAGGACCTTT
TCTCCCTGCTGATCTTTATTTAATCTACTGGATCGAGAAAATAAAAACGA
TCTAGTGAGCAGAAGTCCCTATTTATAGGGACGTCCTTAAATATAGGGTA
TCGTGTGGTAGTTTATGATGGACCAATGCAATACAACTCTTGTCTTGTAC
TTCATTGCGAAGAAGGTCAAAGTCTAAAGAACAAATACATTCTTATTCAA
TCAAGGTTACGATGGACCAATGCCCGAAGAAGATGCACAATATGATGAAG
AAATGTACCATGATAGTTTAAGTGAGTCTTTTCAAATATTATTTTGTACA
TTGTTTCTCCATCTTTCCATATCCGAGATGAATTCTCCTGCTAAATTCCT
GTATAATAAATATCGCTTGCGATTATAGTTCCACGATATTTTTTTTCGCA
CGCCTTTTTGTTTGAGAATTCAATTCTTTTTGAGTTGCACCTCCATAGCG
CTCCTTGTCAGTCACGCCGTAATCATTTTGACTAAAATTTGAACGAGTTC
TATCGCCTACAGTTCATTTCGAAATGATTGGAAAACTGTGAAAGTTGTTG
CCTTTCTTTTGATATTATAATTTACGTGCAAGACCAATAATGCAAAGGAG
GTATGGCATGGGATTGCAAGTCGTACCAGCGAATATATTTGTGCAGATTT
GTTAATATTTTTAGATTCCACAGTGTGCTACTAAGTCAATACACTTTCCT
CCCACTCAAAAAGATGGCCTTTCTTCGATTATGATGTCTGACTGATAATT
TGTTCTTCTTTGGCTCAATATTCTATTTTCTTTGAGCCGATACTAAAATA
ATGAACGTTTATATGTTAGGCTGCAAGGATAAATATTCAAATTGTCCAAC
TACTTTGCGTCAACATTGCGGAAGTACTGTGCACACTTTTGTGAAGACGG
ATTGGTGCCGGAAAACATGTGGTGATTGCTCACCAGATCCAGCTCCTGGT
AAGATGTAATCGAAATAGAAGCTAAACTTTGTACCAAGTTCAAGGTTCAA
GCCTTACCTTAGCAACCATAGATTAAACATTATTGAAGGTAGAAAACACC
CACCCCCTTGATAATACGAACATCGAAAGCCTCATAATATAATAAGGACA
GTGCCCCGGTGCAAATTTTTCCCTCGTTGGGGATGAAATTTTTTATCGAA
ATACCAATGGGGATAGAAAATCTATTGTTTTCAGCTCAAAAATTCCAATG
GGGTTGTTTTTGGAGTGCAATTTTTCCCATTCAATTTTCAATGGGGATAA
AATCATAGAGCAATTTCCCAGTGGGATTGAAATTGTGAGGTATTTTTTCA
ACCGGGGACAAAATTTTGGCCTACTTTTTCACCGGGGTGAGGGGTCCACC
GGGTCTGTGACACAGGGTTGTGATAGGGCTAGGGCTTTAGATGATTAATT
AGAATGGAATTTTGCTAAGATTTGTTTTAAGGTTGTGAGGGGTGACTTAT
CAAGGCGAAGCTCAAAAACCAATTCATGGGAATATACTTGGTTTATAAAT
CGAATAAATATTTAATACTTTGTTTCATAGCTTATGTGACAGCTCAACCA
AAAATTTCAAGCTCAGAGATGGAGAGTATCAAAGGTATGGCTATTAACTT
TCACTATCATTAAAGCTTCACTCCTGATCAAAATACAGAAATTACCGAGA
TATTTGTGATTTACGATGGAAACTTTGTTTAGCTATATTTATCCTTTTTT
CTTTTTTATCTAAAAGCAACTTGTTTGGCAGCTCACAATACAAAAAGGAG
ACTCCACAAAAACACACCCTCAATGACATATGACATGGATCTTGCAAAAC
GAGCTCAAACCTACGCAGAATATCTCCTGGAATTTGACGAGTGGAAACAC
GATCCCTTTCGAAAATACAATGGCTACGAATCTGGAGTCGGTGAAAATCT
TTACTGGTCATCTTCAGCAAGTCGAACCTCTACTAACGCTGTTGTTTCAT
GGTAAGAAAGTAACAAAAAAACATCTTAATGAAGGGTCTTAATACGTCCA
AATCCGAGGTTGAATTTCATGAAAAGTTTTAATTTGAGAGAGTTTTTTTC
CAAAATTTCCGTCAAGCCATTTAAAAAAGGAGCAAACTTTCGTCACCAAA
AATTCCTTTGAAATTCAAAGTTTTTGTCGAAAATTCCACAAATTTCTAAT
ATTTTTGCTAAATTCCGTTTTCCGCACTACAATTGTCCAATTTCTCGTCT
CCTTCAGAGGACCCAGTTTCCAAAATCCCGACTAAATTTTCGTCAAATTC
AACCAATCCGTCCGAAAAAAGGCCTATTCCGCTTCTTCTCAAACCACGGT
CCTCCCTTAGTTGTCTGAGTTTCCAATACGTTTACGTCGTGTTCCACGTA
GATTTTAAAAAGCGTGACAAAAAGAAGGCGAAAATTTAGGTATCAAAAGT
AAAATGACCCCTCTACAAAGTGTACTCTATAAGTCAGCAGCGTGATCTAA
ATTTTGAAACATGTATTCATAGATTTTAAAAGTATGAAAGATTTTCAAGA
AATTTTTCAACAAAGGTCTGGGAAATTATTTATTTATCATAATTGTTACA
TATGGTTAAGCCTACAGGCTAAAGAAACTCGTAGGAGAACATTTTGATTA
CATTCTGTGGTTAATTTCAGGTATAATGAAATCAATAACTACAATTTTGG
AACTGGCAAGTCAAATGGTGGAGTTATTGGCCATTTCACACAATTAGTTT
GGGATTCTTCAACTAAATTGGGTTGCGGTGTTGCTAAAGGAACAGGTGGA
ACTTACGTCGTTTCCAGATATT

Coding sequence (CDS) from alignment at sc0005949:1..2872-

>TCONS_00044655 ID=TCONS_00044655|Name=TCONS_00044655|organism=Clytia hemisphaerica|type=CDS|length=3105bp|location=Sequence derived from alignment at sc0005949:1..2872- (Clytia hemisphaerica)
GTATAATGAAATCAATAACTACAATTTTGGAACTGGCAAGTCAAATGGTG
GAGTTATTGGCCATTTCACACAATTAGTTTGGGATTCTTCAACTAAATTG
GGTTGCGGTGTTGCTAAAGGAACAGGTGGAACTTACGTCGTTTCCAGATA
TCAACTTGTTTGGCAGCTCACAATACAAAAAGGAGACTCCACAAAAACAC
ACCCTCAATGACATATGACATGGATCTTGCAAAACGAGCTCAAACCTACG
CAGAATATCTCCTGGAATTTGACGAGTGGAAACACGATCCCTTTCGAAAA
TACAATGGCTACGAATCTGGAGTCGGTGAAAATCTTTACTGGTCATCTTC
AGCAAGTCGAACCTCTACTAACGCTGTTGTTTCATGCTTATGTGACAGCT
CAACCAAAAATTTCAAGCTCAGAGATGGAGAGTATCAAAGGCTGCAAGGA
TAAATATTCAAATTGTCCAACTACTTTGCGTCAACATTGCGGAAGTACTG
TGCACACTTTTGTGAAGACGGATTGGTGCCGGAAAACATGTGGTGATTGC
TCACCAGATCCAGCTCCTGATGCCCGAAGAAGATGCACAATATGATGAAG
AAATGTACCATGATAGTTTAAGTATAATGAAATCAATAACTACAATTTTG
GAACTGGCAAGTCAAATGGTGGAGTTATTGGCCATTTCACACAATTAGTT
TGGGATTCTTCAACTAAATTGGGTTGCGGTGTTGCTAAAGGAACAGGTGG
AACTTACGTCGTTTCCAGATATCAACTTGTTTGGCAGCTCACAATACAAA
AAGGAGACTCCACAAAAACACACCCTCAATGACATATGACATGGATCTTG
CAAAACGAGCTCAAACCTACGCAGAATATCTCCTGGAATTTGACGAGTGG
AAACACGATCCCTTTCGAAAATACAATGGCTACGAATCTGGAGTCGGTGA
AAATCTTTACTGGTCATCTTCAGCAAGTCGAACCTCTACTAACGCTGTTG
TTTCATGCTTATGTGACAGCTCAACCAAAAATTTCAAGCTCAGAGATGGA
GAGTATCAAAGGCTGCAAGGATAAATATTCAAATTGTCCAACTACTTTGC
GTCAACATTGCGGAAGTACTGTGCACACTTTTGTGAAGACGGATTGGTGC
CGGAAAACATGTGGTGATTGCTCACCAGATCCAGCTCCTGATGCCCGAAG
AAGATGCACAATATGATGAAGAAATGTACCATGATAGTTTAAGTATAATG
AAATCAATAACTACAATTTTGGAACTGGCAAGTCAAATGGTGGAGTTATT
GGCCATTTCACACAATTAGTTTGGGATTCTTCAACTAAATTGGGTTGCGG
TGTTGCTAAAGGAACAGGTGGAACTTACGTCGTTTCCAGATATCAACTTG
TTTGGCAGCTCACAATACAAAAAGGAGACTCCACAAAAACACACCCTCAA
TGACATATGACATGGATCTTGCAAAACGAGCTCAAACCTACGCAGAATAT
CTCCTGGAATTTGACGAGTGGAAACACGATCCCTTTCGAAAATACAATGG
CTACGAATCTGGAGTCGGTGAAAATCTTTACTGGTCATCTTCAGCAAGTC
GAACCTCTACTAACGCTGTTGTTTCATGCTTATGTGACAGCTCAACCAAA
AATTTCAAGCTCAGAGATGGAGAGTATCAAAGGCTGCAAGGATAAATATT
CAAATTGTCCAACTACTTTGCGTCAACATTGCGGAAGTACTGTGCACACT
TTTGTGAAGACGGATTGGTGCCGGAAAACATGTGGTGATTGCTCACCAGA
TCCAGCTCCTGATGCCCGAAGAAGATGCACAATATGATGAAGAAATGTAC
CATGATAGTTTAAGTATAATGAAATCAATAACTACAATTTTGGAACTGGC
AAGTCAAATGGTGGAGTTATTGGCCATTTCACACAATTAGTTTGGGATTC
TTCAACTAAATTGGGTTGCGGTGTTGCTAAAGGAACAGGTGGAACTTACG
TCGTTTCCAGATATCAACTTGTTTGGCAGCTCACAATACAAAAAGGAGAC
TCCACAAAAACACACCCTCAATGACATATGACATGGATCTTGCAAAACGA
GCTCAAACCTACGCAGAATATCTCCTGGAATTTGACGAGTGGAAACACGA
TCCCTTTCGAAAATACAATGGCTACGAATCTGGAGTCGGTGAAAATCTTT
ACTGGTCATCTTCAGCAAGTCGAACCTCTACTAACGCTGTTGTTTCATGC
TTATGTGACAGCTCAACCAAAAATTTCAAGCTCAGAGATGGAGAGTATCA
AAGGCTGCAAGGATAAATATTCAAATTGTCCAACTACTTTGCGTCAACAT
TGCGGAAGTACTGTGCACACTTTTGTGAAGACGGATTGGTGCCGGAAAAC
ATGTGGTGATTGCTCACCAGATCCAGCTCCTGATGCCCGAAGAAGATGCA
CAATATGATGAAGAAATGTACCATGATAGTTTAAGTATAATGAAATCAAT
AACTACAATTTTGGAACTGGCAAGTCAAATGGTGGAGTTATTGGCCATTT
CACACAATTAGTTTGGGATTCTTCAACTAAATTGGGTTGCGGTGTTGCTA
AAGGAACAGGTGGAACTTACGTCGTTTCCAGATATCAACTTGTTTGGCAG
CTCACAATACAAAAAGGAGACTCCACAAAAACACACCCTCAATGACATAT
GACATGGATCTTGCAAAACGAGCTCAAACCTACGCAGAATATCTCCTGGA
ATTTGACGAGTGGAAACACGATCCCTTTCGAAAATACAATGGCTACGAAT
CTGGAGTCGGTGAAAATCTTTACTGGTCATCTTCAGCAAGTCGAACCTCT
ACTAACGCTGTTGTTTCATGCTTATGTGACAGCTCAACCAAAAATTTCAA
GCTCAGAGATGGAGAGTATCAAAGGCTGCAAGGATAAATATTCAAATTGT
CCAACTACTTTGCGTCAACATTGCGGAAGTACTGTGCACACTTTTGTGAA
GACGGATTGGTGCCGGAAAACATGTGGTGATTGCTCACCAGATCCAGCTC
CTGATGCCCGAAGAAGATGCACAATATGATGAAGAAATGTACCATGATAG
TTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028271XLOC_028271Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044655-exon-sc0005949-1575043694:2502..2872TCONS_00044655-exon-sc0005949-1575043694:2502..2872Clytia hemisphaericaexon
TCONS_00044655-exon-sc0005949-1575043694:1825..1953TCONS_00044655-exon-sc0005949-1575043694:1825..1953Clytia hemisphaericaexon
TCONS_00044655-exon-sc0005949-1575043694:1189..1242TCONS_00044655-exon-sc0005949-1575043694:1189..1242Clytia hemisphaericaexon
TCONS_00044655-exon-sc0005949-1575043694:822..1056TCONS_00044655-exon-sc0005949-1575043694:822..1056Clytia hemisphaericaexon
TCONS_00044655-exon-sc0005949-1575043694:1..152TCONS_00044655-exon-sc0005949-1575043694:1..152Clytia hemisphaericaexon
TCONS_00044655-exon-sc0005949-1510915933:2502..2872TCONS_00044655-exon-sc0005949-1510915933:2502..2872Clytia hemisphaericaexon
TCONS_00044655-exon-sc0005949-1510915933:1825..1953TCONS_00044655-exon-sc0005949-1510915933:1825..1953Clytia hemisphaericaexon
TCONS_00044655-exon-sc0005949-1510915933:1189..1242TCONS_00044655-exon-sc0005949-1510915933:1189..1242Clytia hemisphaericaexon
TCONS_00044655-exon-sc0005949-1510915933:822..1056TCONS_00044655-exon-sc0005949-1510915933:822..1056Clytia hemisphaericaexon
TCONS_00044655-exon-sc0005949-1510915933:1..152TCONS_00044655-exon-sc0005949-1510915933:1..152Clytia hemisphaericaexon
TCONS_00044655-exon-sc0005949-1491911889:2502..2872TCONS_00044655-exon-sc0005949-1491911889:2502..2872Clytia hemisphaericaexon
TCONS_00044655-exon-sc0005949-1491911889:1825..1953TCONS_00044655-exon-sc0005949-1491911889:1825..1953Clytia hemisphaericaexon
TCONS_00044655-exon-sc0005949-1491911889:1189..1242TCONS_00044655-exon-sc0005949-1491911889:1189..1242Clytia hemisphaericaexon
TCONS_00044655-exon-sc0005949-1491911889:822..1056TCONS_00044655-exon-sc0005949-1491911889:822..1056Clytia hemisphaericaexon
TCONS_00044655-exon-sc0005949-1491911889:1..152TCONS_00044655-exon-sc0005949-1491911889:1..152Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044655-proteinTCONS_00044655-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005949supercontigsc0005949:1..2872 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0536882	8.81003	6.94677	49.1775	65.7358	104.702	101.972	44.7335	70.4583	0.890123	0.846163	0.0275211	0.131029	4.20805	4.51905	3.59427	4.25437	2.66975	1.65986	5.4047	6.06862	6.80286	9.47685	0.277373	0.82648	0.0573516	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002413V5_allergen
IPR001283Allrgn_V5/Tpx1
IPR003582ShKT_dom
IPR014044CAP_domain
IPR018244Allrgn_V5/Tpx1_CS
IPR034113SCP_GAPR1-like
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044655 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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