TCONS_00044641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044641
Unique NameTCONS_00044641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length757

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044641 ID=TCONS_00044641|Name=TCONS_00044641|organism=Clytia hemisphaerica|type=transcript|length=757bp
taaaaataaaaacgaagAGCATTAGAGAAACTGGACAACTTACGAAAATA
ATGAAGCATCGATCGATAGAGTCATCAAACACATGTTATATTCCTCGGTT
ACAAAAGATAGCATATTGAATCTAAAAGCAGAAATTTATCACACCCAGCA
GGTCGTACTGAACAATAGTAGATACTTGAAAGACGGGAGAAGATTATCAA
TAACGCTCTTGTTGACTCGGCACAATGGCGAGAGAAACGGatgatacacc
cctgtatcagtgacccggtcaagGATCCGTCCCGATGAAAACCGCGTACC
ATCACCAATGTTACTGGTTGTTACCATTATGAGCTGTTTACAGAGAGCGT
GCTGCTTGAGAGTCGTGAAGAGGNCTGTTACCATTATGAGCTGTTTACAG
AGAGCGTGCTGCTTGAGAGTCGTGAAGAGGAAAACAAGAAcatctttttt
tatcaaatttaacaATTCATAAAATGATATACGTTACGAAATATATACAA
CATTAAAAAAgtggccaaaaataaaaaatgaggccattgatcattaaaat
caaattaatgaATAGACTGTAACTTCGttggtctttcttttctttctatt
ggcgtttttttttcattctctcACTCACACGCCACTGTCTCAATGCCGCC
CCGGTGAAGATCTTTtcctattattattattatcaatttattttcagttg
gtaACAACGATAGGACCTAGTGTCCTAAATAGTTACAGCCGTGACCGTTT
ACTAATA
Run BLAST on NCBI

transcript from alignment at sc0005925:1610..3116+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044641 ID=TCONS_00044641|Name=TCONS_00044641|organism=Clytia hemisphaerica|type=transcript|length=1507bp|location=Sequence derived from alignment at sc0005925:1610..3116+ (Clytia hemisphaerica)
taaaaataaaaacgaagAGCATTAGAGAAACTGGACAACTTACGAAAATA
ATGAAGCATCGATCGATAGAGTCATCAAACACATGTTATATTCCTCGGTT
ACAAAAGATAGCATATTGAATCTAAAAGCAGAAATTTATCACACCCAGCA
GGTGCGTATTTCTTTTTTCCTCAGAAGAGTCTAGCTCACCttcacccctg
tttcacaggtCAGGTTAGGTTAATAGAAAATTCGCCGGAAAAAAAACCCA
CTGTACATACCCCGTTGTTCCCCGTTGTTTACGCACATTATAAATGAACA
CTGTTTTGACGTTTAGCGTCCAttgaatacccctgtctcaagtaTCACTT
GACCACTACCAATGCCCCGTGAAAAGATAAATTTTCCCAGTTTCGCAGTG
ATACTGGGTGTGATAGCTGAGCCGTTAAAAAGAGTAGAAAAATTAACCCT
ATCATTGTATACTTTTGTTTTCCCATTATTTCAGGTCGTACTGAACAATA
GTAGATACTTGAAAGACGGGAGAAGATTATCAATAACGCTCTTGTTGACT
CGGCACAATGGCGAGAGAAACGGatgatacacccctgtatcagtgacccg
gtcaagGATCCGTCCCGATGAAAACCGgtgagaaaaatacaaaaaaagac
cTAACACAAACACGTTCACTGCCAAGCCACTTTAAGAATTTTGACCTCAT
TgaatttcatcaaaagtttgactttcagaggCTCCTGTAGCCTTGGTTTT
TTGCTTTAAGTACCTACAAATCACCTACCGATCGACGCAGAATTTAAGGA
AGActccaaaaatgcaaaaacgaaATACTACAACTAGGTCAACCCATCTC
ATCTATGCTGAAATCTAAATAGATTTTTGTGCTTCCCAATTAGTGTGCGT
TACTTGTCACTGTAACTTCGGCAATTTATCTACTGACTTTTGAGTGACGG
CCAATTTGAGTTTCAAGCTTAACAACAAAATCTACCGTACCACGGATCTG
CTACAGTCATTTgatagtaattttaattttcattctttatttaGCGTACC
ATCACCAATGTTACTGGTTGTTACCATTATGAGCTGTTTACAGAGAGCGT
GCTGCTTGAGAGTCGTGAAGAGGNCTGTTACCATTATGAGCTGTTTACAG
AGAGCGTGCTGCTTGAGAGTCGTGAAGAGGAAAACAAGAAcatctttttt
tatcaaatttaacaATTCATAAAATGATATACGTTACGAAATATATACAA
CATTAAAAAAgtggccaaaaataaaaaatgaggccattgatcattaaaat
caaattaatgaATAGACTGTAACTTCGttggtctttcttttctttctatt
ggcgtttttttttcattctctcACTCACACGCCACTGTCTCAATGCCGCC
CCGGTGAAGATCTTTtcctattattattattatcaatttattttcagttg
gtaACAACGATAGGACCTAGTGTCCTAAATAGTTACAGCCGTGACCGTTT
ACTAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028258XLOC_028258Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044641-exon-sc0005925-1491911889:1610..1760TCONS_00044641-exon-sc0005925-1491911889:1610..1760Clytia hemisphaericaexon
TCONS_00044641-exon-sc0005925-1510915933:1610..1760TCONS_00044641-exon-sc0005925-1510915933:1610..1760Clytia hemisphaericaexon
TCONS_00044641-exon-sc0005925-1575043694:1610..1760TCONS_00044641-exon-sc0005925-1575043694:1610..1760Clytia hemisphaericaexon
TCONS_00044641-exon-sc0005925-1491911889:2094..2236TCONS_00044641-exon-sc0005925-1491911889:2094..2236Clytia hemisphaericaexon
TCONS_00044641-exon-sc0005925-1510915933:2094..2236TCONS_00044641-exon-sc0005925-1510915933:2094..2236Clytia hemisphaericaexon
TCONS_00044641-exon-sc0005925-1575043694:2094..2236TCONS_00044641-exon-sc0005925-1575043694:2094..2236Clytia hemisphaericaexon
TCONS_00044641-exon-sc0005925-1491911889:2654..3116TCONS_00044641-exon-sc0005925-1491911889:2654..3116Clytia hemisphaericaexon
TCONS_00044641-exon-sc0005925-1510915933:2654..3116TCONS_00044641-exon-sc0005925-1510915933:2654..3116Clytia hemisphaericaexon
TCONS_00044641-exon-sc0005925-1575043694:2654..3116TCONS_00044641-exon-sc0005925-1575043694:2654..3116Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005925supercontigsc0005925:1610..3116 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.594691	0.626792	0.249649	0.265149	5.75379	3.73974	4.90056	3.8426	2.28649	4.02736	1.29373	1.59581	1.33983	0.939013	1.74264	1.80669	4.07269	3.26884	1.10113	2.18081	2.91243	2.30939	1.51493	1.27124	1.62014	1.24076	1.70029	0.313621	1.8946	1.20301
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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