TCONS_00044636 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044636
Unique NameTCONS_00044636
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044636 ID=TCONS_00044636|Name=TCONS_00044636|organism=Clytia hemisphaerica|type=transcript|length=315bp
GATTTCTTATATCCAGGAtattccactgagatatgcagtagGAGAAGAAA
GTGTTTCGGAAACGTTCagtaggatttcttgttctcaGAGCTATGGGCGC
TGTAAGCCTTGctggcaggtagttacgtaaataagaTGGAGTTGAGttgt
ttataattttaaatATCATTCTTCTTGCAAAACGCCTGTCAGCAAGGCTT
TCAAGACCAATTTCAGAGTACATTTTAtcctgagacgttccacgaaaaca
aCCTGTGATGGCTAAACTGGCATTGTATTGCATGGTTTCCAGCTTCTGCA
CGAAAGAGGCATTAC
Run BLAST on NCBI

protein sequence of TCONS_00044636-protein

>TCONS_00044636-protein ID=TCONS_00044636-protein|Name=TCONS_00044636-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
NASFVQKLETMQYNASLAITGCFRGTSQDKMYSEIGLESLADRRFARRMI
FKIINNSTPSYLRNYLPARLTAPIALRTRNPTERFRNTFFSYCISQWNIL
DIRN
Run BLAST on NCBI

transcript from alignment at sc0005916:17..331

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044636 ID=TCONS_00044636|Name=TCONS_00044636|organism=Clytia hemisphaerica|type=transcript|length=315bp|location=Sequence derived from alignment at sc0005916:17..331 (Clytia hemisphaerica)
GTAATGCCTCTTTCGTGCAGAAGCTGGAAACCATGCAATACAATGCCAGT
TTAGCCATCACAGGttgttttcgtggaacgtctcaggaTAAAATGTACTC
TGAAATTGGTCTTGAAAGCCTTGCTGACAGGCGTTTTGCAAGAAGAATGA
TatttaaaattataaacaaCTCAACTCCAtcttatttacgtaactacctg
ccagCAAGGCTTACAGCGCCCATAGCTCtgagaacaagaaatcctactGA
ACGTTTCCGAAACACTTTCTTCTCctactgcatatctcagtggaataTCC
TGGATATAAGAAATC

Coding sequence (CDS) from alignment at sc0005916:17..331

>TCONS_00044636 ID=TCONS_00044636|Name=TCONS_00044636|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0005916:17..331 (Clytia hemisphaerica)
AATGCCTCTTTCGTGCAGAAGCTGGAAACCATGCAATACAATGCCAGTTT
AGCCATCACAGGttgttttcgtggaacgtctcaggaTAAAATGTACTCTG
AAATTGGTCTTGAAAGCCTTGCTGACAGGCGTTTTGCAAGAAGAATGATa
tttaaaattataaacaaCTCAACTCCAtcttatttacgtaactacctgcc
agCAAGGCTTACAGCGCCCATAGCTCtgagaacaagaaatcctactGAAC
GTTTCCGAAACACTTTCTTCTCctactgcatatctcagtggaataTCCTG
GATATAAGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028253XLOC_028253Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044636-proteinTCONS_00044636-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044636-exon-sc0005916-1491911889:17..331TCONS_00044636-exon-sc0005916-1491911889:17..331Clytia hemisphaericaexon
TCONS_00044636-exon-sc0005916-1510915933:17..331TCONS_00044636-exon-sc0005916-1510915933:17..331Clytia hemisphaericaexon
TCONS_00044636-exon-sc0005916-1575043694:17..331TCONS_00044636-exon-sc0005916-1575043694:17..331Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005916supercontigsc0005916:17..331 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.378871	0	0	0	0.430204	0.805503	0.845928	2.44491	0	1.11427	0.667631	0.231114	0.950035	0.203907	0	0.257468	0	0.744442	0	0	0.383666	0	2.51485	2.88571	1.37648	0	1.1142	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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