TCONS_00044603 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044603
Unique NameTCONS_00044603
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044603 ID=TCONS_00044603|Name=TCONS_00044603|organism=Clytia hemisphaerica|type=transcript|length=645bp
aaacatcATTAACAATGATGAGGCACAAACTTTTGAACAATTCCTAAGAA
TGATCTTTCTTTTATCTACATAAAAAATAGACAACAGGAAAGAAGAAAGT
GTATAGTTGTAAACAGTTCTTTATATTGGTTTATCTTTTATTTGGATAGC
CGAGAAGGAGCAGTAGATAAGATGATGGTCAGAAATGGCAGGATCAATTG
AATGGGAATtgtttattggacctaccccggtggggtataggtcctataaa
ttaaccgatgtctgttcgtccgttcgtctgttcgttcgttcgtccgtccg
tctgttacccgNCAGAAACCAAAAGAGCACTGAATAATCAAGAAGGAGAA
TACTTTACTTTAGGAAAACAAATGAGAAGAAGAATCATGCAGCAAAAGTA
ACTTAAGAAGGTTTGTCATAAACCAACGACCTCATAAACATAGCATGGAA
CTCATAAAcatagcatgcgagagggaaggaaaaagatttgagagaggaaa
aatcatacagcaaaagtgatttttttaaaaggttttgGAGAGACGAAAAA
TCTCGcagcaaaagttatttttgagaaaGGCTTGTTTATTGAAGACCAAA
GCATAGTATGAGAGAAAGAGGAGAGAGAAGATGTGTATCCATTAG
Run BLAST on NCBI

transcript from alignment at sc0005866:1070..1766-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044603 ID=TCONS_00044603|Name=TCONS_00044603|organism=Clytia hemisphaerica|type=transcript|length=697bp|location=Sequence derived from alignment at sc0005866:1070..1766- (Clytia hemisphaerica)
AAACATCATTAACAATGATGAGGCACAAACTTTTGAACAATTCCTAAGAA
TGATCTTTCTTTTATCTACATAAAAAATAGACAACAGGAAAGAAGAAAGT
GTATAGTTGTAAACAGTTCTTTATATTGGTTTATCTTTTATTTGGATAGC
CGAGAAGGAGCAGTAGATAAGATGATGGTCAGAAATGGCAGGATCAATTG
AATGGGAATTGTTTATTGGACCTACCCCGGTGGGGTATAGGTCCTATAAA
TTAACCGATGTCTGTTCGTCCGTTCGTCTGTTCGTTCGTTCGTCCGTCCG
TCTGTTACCCGNCAGAAACCAAAAGAGCACTGAATAATCAAGAAGGAGAA
TACTTTACTTTAGGAAAACAAATGAGAAGAAGAATCATGCAGCAAAAGTA
ACTTAAGAAGGTTTGTCATAAACCAACGACCTCATAAACATAGCANAAAG
TAACTTAAGAAGGTTTGTCATAAACCAACTACCTCATAAACATAGCATGG
AACTCATAAACATAGCATGCGAGAGGGAAGGAAAAAGATTTGAGAGAGGA
AAAATCATACAGCAAAAGTGATTTTTTTAAAAGGTTTTGGAGAGACGAAA
AATCTCGCAGCAAAAGTTATTTTTGAGAAAGGCTTGTTTATTGAAGACCA
AAGCATAGTATGAGAGAAAGAGGAGAGAGAAGATGTGTATCCATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028221XLOC_028221Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044603-exon-sc0005866-1575043694:1328..1766TCONS_00044603-exon-sc0005866-1575043694:1328..1766Clytia hemisphaericaexon
TCONS_00044603-exon-sc0005866-1575043694:1070..1275TCONS_00044603-exon-sc0005866-1575043694:1070..1275Clytia hemisphaericaexon
TCONS_00044603-exon-sc0005866-1510915933:1328..1766TCONS_00044603-exon-sc0005866-1510915933:1328..1766Clytia hemisphaericaexon
TCONS_00044603-exon-sc0005866-1510915933:1070..1275TCONS_00044603-exon-sc0005866-1510915933:1070..1275Clytia hemisphaericaexon
TCONS_00044603-exon-sc0005866-1491911889:1328..1766TCONS_00044603-exon-sc0005866-1491911889:1328..1766Clytia hemisphaericaexon
TCONS_00044603-exon-sc0005866-1491911889:1070..1275TCONS_00044603-exon-sc0005866-1491911889:1070..1275Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005866supercontigsc0005866:1070..1766 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.34287	1.31218	1.34212	1.39649	1.44856	1.47412	1.22631	1.27321	0.750486	1.06438	0.830369	1.29995	1.13404	1.96549	0.248366	0.388903	1.0343	0.31305	0.451355	0.507391	0.958079	0.270021	0	0.414236	0.4524	1.05195	0.488041	0.550717	1.01958	0.690927
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044603 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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