TCONS_00044579 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044579
Unique NameTCONS_00044579
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length630

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044579 ID=TCONS_00044579|Name=TCONS_00044579|organism=Clytia hemisphaerica|type=transcript|length=630bp
NTTTAATAGCTTCCCAACGATCTAgttcctttttgaaaaaagtcataatt
CTGTGGGGATCACcgtattttttcttcaatagagACTTAGCATGATTATA
ACCGTCACTTAAGTACAAACAACACTTGATTAAGTCATTAGCCTCTCCCT
CAGTAAAATTCATTAAGCGAGCTAGACGTCCTTCACTGTCAGAGATCCTC
TTTTCAACTAGTTCTTCAAAATTTGTTATGAATGATCTATATTCCTATGG
ATCACCCTTGAAAACCTCAAGTTTAACCGCAGGAGCACCTTGCATTTTAA
CAAGATCAAAAAGAGCATTCGAAATATCAGCAGTATCAACGGTCGTTTGA
AACTTAGAAACTCTTCTCACACTTCGTGTTCTAGGTTTAGAAGGTGGAGC
TGGCAAAAAATTGACACTACCATGGCTAGATACAGACTCTGGCCTAGAAA
TTTGCTTAGAAGAAATAGGAATACTGTTTCTTGTAGACTCAGTCTTTTTC
TCAAAGTTGGAATTTCCCAAcgtccaattttcaaaaatatcagaaattgc
CCTTTTCTTAGCAACTTCTTTTTCAAGGAGCAAACGATCTTTTTCACTAA
CACCCTCCCTCTCAGCAAAGGCAAGTTCAA
Run BLAST on NCBI

protein sequence of TCONS_00044579-protein

>TCONS_00044579-protein ID=TCONS_00044579-protein|Name=TCONS_00044579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
ELAFAEREGVSEKDRLLLEKEVAKKRAISDIFENWTLGNSNFEKKTESTR
NSIPISSKQISRPESVSSHGSVNFLPAPPSKPRTRSVRRVSKFQTTVDTA
DISNALFDLVKMQGAPAVKLEVFKGDP
Run BLAST on NCBI

transcript from alignment at sc0005821:2433..3062

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044579 ID=TCONS_00044579|Name=TCONS_00044579|organism=Clytia hemisphaerica|type=transcript|length=630bp|location=Sequence derived from alignment at sc0005821:2433..3062 (Clytia hemisphaerica)
TTGAACTTGCCTTTGCTGAGAGGGAGGGTGTTAGTGAAAAAGATCGTTTG
CTCCTTGAAAAAGAAGTTGCTAAGAAAAGGgcaatttctgatatttttga
aaattggacgTTGGGAAATTCCAACTTTGAGAAAAAGACTGAGTCTACAA
GAAACAGTATTCCTATTTCTTCTAAGCAAATTTCTAGGCCAGAGTCTGTA
TCTAGCCATGGTAGTGTCAATTTTTTGCCAGCTCCACCTTCTAAACCTAG
AACACGAAGTGTGAGAAGAGTTTCTAAGTTTCAAACGACCGTTGATACTG
CTGATATTTCGAATGCTCTTTTTGATCTTGTTAAAATGCAAGGTGCTCCT
GCGGTTAAACTTGAGGTTTTCAAGGGTGATCCATAGGAATATAGATCATT
CATAACAAATTTTGAAGAACTAGTTGAAAAGAGGATCTCTGACAGTGAAG
GACGTCTAGCTCGCTTAATGAATTTTACTGAGGGAGAGGCTAATGACTTA
ATCAAGTGTTGTTTGTACTTAAGTGACGGTTATAATCATGCTAAGTctct
attgaagaaaaaatacgGTGATCCCCACAGaattatgacttttttcaaaa
aggaacTAGATCGTTGGGAAGCTATTAAAN

Coding sequence (CDS) from alignment at sc0005821:2433..3062

>TCONS_00044579 ID=TCONS_00044579|Name=TCONS_00044579|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at sc0005821:2433..3062 (Clytia hemisphaerica)
GAACTTGCCTTTGCTGAGAGGGAGGGTGTTAGTGAAAAAGATCGTTTGCT
CCTTGAAAAAGAAGTTGCTAAGAAAAGGgcaatttctgatatttttgaaa
attggacgTTGGGAAATTCCAACTTTGAGAAAAAGACTGAGTCTACAAGA
AACAGTATTCCTATTTCTTCTAAGCAAATTTCTAGGCCAGAGTCTGTATC
TAGCCATGGTAGTGTCAATTTTTTGCCAGCTCCACCTTCTAAACCTAGAA
CACGAAGTGTGAGAAGAGTTTCTAAGTTTCAAACGACCGTTGATACTGCT
GATATTTCGAATGCTCTTTTTGATCTTGTTAAAATGCAAGGTGCTCCTGC
GGTTAAACTTGAGGTTTTCAAGGGTGATCCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028198XLOC_028198Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044579-proteinTCONS_00044579-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044579-exon-sc0005821-1491911889:2433..3062TCONS_00044579-exon-sc0005821-1491911889:2433..3062Clytia hemisphaericaexon
TCONS_00044579-exon-sc0005821-1510915933:2433..3062TCONS_00044579-exon-sc0005821-1510915933:2433..3062Clytia hemisphaericaexon
TCONS_00044579-exon-sc0005821-1575043694:2433..3062TCONS_00044579-exon-sc0005821-1575043694:2433..3062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005821supercontigsc0005821:2433..3062 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.38304	3.81716	1.6948	1.02684	0.724475	0.459308	0.300059	0.507145	0.235238	0.999244	0.341508	0.298156	0.647866	0.661432	0.641297	0.705327	0	0.701695	1.25413	0.562441	0.325909	0.923503	1.54596	1.1108	0.544111	0.242246	0.577756	0.616596	4.06483	3.26508
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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