TCONS_00044575 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044575
Unique NameTCONS_00044575
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length892

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044575 ID=TCONS_00044575|Name=TCONS_00044575|organism=Clytia hemisphaerica|type=transcript|length=892bp
agaaattcaaaatggaggtTTGTGGTGACAAGGTTTGTGCTGATGCTCTT
gaagttttaaagaaaaagtttggtATATCTTCTTTAAAAGATTACCAAAC
tgactttttcaaaacatttcacCACCACCTCCAACAACAACAAAGGGTTC
CAGACTTCTTCATTGCTCAACCAACTGGCCATGGGAAAAGCCTCTTGTTT
CAAGGCATATCATGCTTTTTGGGCCATTTGGCTTTGGGCCAAGTCCAGCC
ATCTTCAACAACAGCTTTGGTCATCTGCCCTATCAATGCACTTATTGAAG
ATCAAGTGGCACTGATGGCCAAAAGAGACATTATTGCAAAACGTTGGACA
CATGATATGGTAAAGTGTGTTTCTGCGCTTATaataaatttttactttag
ctaCTTTAGTCTTTAGTTAGATTCCTGCACAATAAATCTCAGACTAATTT
TTGTCACTTGATttagtaattttcaaaaatatttcttattgaAAAACATA
ACAAGTAATGTTCTTTTGAATGTTTGgatttttatgactttataTATTTA
TTCTTGAAATAGTTTTACTTAACACAGCTTGCATTATAAACAGAAAACAC
AAATGAACATTTATTTTTATCTCATCGTCATGTATGAATGAGAACCGTGT
CATAATGATATCCTAAATTTTGTGCTGTTGTTGGtaaataccgtcaactg
ccaGACTGACTGCCCCAACTTGAGACAACCAGCCGGCCGTAACATGAGAC
ACTAGAACAGCAACCACTTCACCAGTCTTCTAGggttattttttacattt
ttgagaaaatagaGATAAAAGCTCATCTTTTCTGTTATCAAGCAGATATT
TAACACCAGAAAGAAAAAGATAACCAGAAAGCAATTTTAAAT
Run BLAST on NCBI

protein sequence of TCONS_00044575-protein

>TCONS_00044575-protein ID=TCONS_00044575-protein|Name=TCONS_00044575-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
KFKMEVCGDKVCADALEVLKKKFGISSLKDYQTDFFKTFHHHLQQQQRVP
DFFIAQPTGHGKSLLFQGISCFLGHLALGQVQPSSTTALVICPINALIED
QVALMAKRDIIAKRWTHDMVKCVSALIINFYFSYFSL
Run BLAST on NCBI

transcript from alignment at sc0005817:2570..3461

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044575 ID=TCONS_00044575|Name=TCONS_00044575|organism=Clytia hemisphaerica|type=transcript|length=892bp|location=Sequence derived from alignment at sc0005817:2570..3461 (Clytia hemisphaerica)
ATTTAAAATTGCTTTCTGGTTATCTTTTTCTTTCTGGTGTTAAATATCTG
CTTGATAACAGAAAAGATGAGCTTTTATCtctattttctcaaaaatgtaa
aaaataaccCTAGAAGACTGGTGAAGTGGTTGCTGTTCTAGTGTCTCATG
TTACGGCCGGCTGGTTGTCTCAAGTTGGGGCAGTCAGTCtggcagttgac
ggtatttaCCAACAACAGCACAAAATTTAGGATATCATTATGACACGGTT
CTCATTCATACATGACGATGAGATAAAAATAAATGTTCATTTGTGTTTTC
TGTTTATAATGCAAGCTGTGTTAAGTAAAACTATTTCAAGAATAAATAta
taaagtcataaaaatcCAAACATTCAAAAGAACATTACTTGTTATGTTTT
tcaataagaaatatttttgaaaattactaaATCAAGTGACAAAAATTAGT
CTGAGATTTATTGTGCAGGAATCTAACTAAAGACTAAAGtagctaaagta
aaaatttattATAAGCGCAGAAACACACTTTACCATATCATGTGTCCAAC
GTTTTGCAATAATGTCTCTTTTGGCCATCAGTGCCACTTGATCTTCAATA
AGTGCATTGATAGGGCAGATGACCAAAGCTGTTGTTGAAGATGGCTGGAC
TTGGCCCAAAGCCAAATGGCCCAAAAAGCATGATATGCCTTGAAACAAGA
GGCTTTTCCCATGGCCAGTTGGTTGAGCAATGAAGAAGTCTGGAACCCTT
TGTTGTTGTTGGAGGTGGTGgtgaaatgttttgaaaaagtcaGTTTGGTA
ATCTTTTAAAGAAGATATaccaaactttttctttaaaacttcAAGAGCAT
CAGCACAAACCTTGTCACCACAAacctccattttgaatttct

Coding sequence (CDS) from alignment at sc0005817:2570..3461

>TCONS_00044575 ID=TCONS_00044575|Name=TCONS_00044575|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0005817:2570..3461 (Clytia hemisphaerica)
CTAAAGACTAAAGtagctaaagtaaaaatttattATAAGCGCAGAAACAC
ACTTTACCATATCATGTGTCCAACGTTTTGCAATAATGTCTCTTTTGGCC
ATCAGTGCCACTTGATCTTCAATAAGTGCATTGATAGGGCAGATGACCAA
AGCTGTTGTTGAAGATGGCTGGACTTGGCCCAAAGCCAAATGGCCCAAAA
AGCATGATATGCCTTGAAACAAGAGGCTTTTCCCATGGCCAGTTGGTTGA
GCAATGAAGAAGTCTGGAACCCTTTGTTGTTGTTGGAGGTGGTGgtgaaa
tgttttgaaaaagtcaGTTTGGTAATCTTTTAAAGAAGATATaccaaact
ttttctttaaaacttcAAGAGCATCAGCACAAACCTTGTCACCACAAacc
tccattttgaattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028194XLOC_028194Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044575-proteinTCONS_00044575-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044575-exon-sc0005817-1491911889:2570..3461TCONS_00044575-exon-sc0005817-1491911889:2570..3461Clytia hemisphaericaexon
TCONS_00044575-exon-sc0005817-1510915933:2570..3461TCONS_00044575-exon-sc0005817-1510915933:2570..3461Clytia hemisphaericaexon
TCONS_00044575-exon-sc0005817-1575043694:2570..3461TCONS_00044575-exon-sc0005817-1575043694:2570..3461Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005817supercontigsc0005817:2570..3461 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.051944	0	0	0	1.14471	1.03612	0.331445	0.790868	2.12461	1.47798	2.18463	2.68417	1.04386	2.25019	0.058991	0	0	0.0399678	0	0	0	0	0	0.0541468	0.849381	0.867375	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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