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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044573 ID=TCONS_00044573|Name=TCONS_00044573|organism=Clytia hemisphaerica|type=transcript|length=713bp
CATTATTGTCAGTCTCAGAGAAAATCAAATGATCTCGACGATCAATATCT
GGCATATCTAGTTTCAAATggatttcactttttgaaaccCACGATTGATC
AGCCTTTTGTGGCCAAACATAGTAACCACCTGCTTTAAAGACAAGGTAGC
TCACTTCAATCATATcatcatcaacatcaataaCTTGACCAATAAAATGC
TCCTTTCTTGTTGGAGCCTTGGGATTTTCATTGGTTATCGCAATACAAAC
AAAATCACTTATCTTGATTTCAAAATGTGATTTAATAGCCTCCATTGTAT
CTTGTAATACATCGATTTCTTCTTCTGGTACGTCAGTTTCATCCACAACT
TCAATCTGTGTTGGCTCGATaacttttcctttctttttctcACGAGTAAG
GCGGGAAAATTGACGAGCCATCTGCTCCTTAGTGAGGTACTCATCAGGGG
TAAACATTTTACAGTTGTTCTCATCTCTACAAGAACGCATTTTCAACACA
GCAGCTTCTGCTGTTGTTTTCTTTCCGGATCCTGACTCTCCTTTCATAAA
CTCATCGTAAATGAATTGACGTTGCTTCTGGTTGAAACGGGTAACTACTC
TTTCTGTAAGAGCCCATCCAAACTTATTGAAATCCCTGTACAACTCGCAA
TCTTCAATCAAATCTGAGAGGGGGATGGAGACTGATGGTTGGTTTTGTGA
TGTGATGGTGTGG Run BLAST on NCBI protein sequence of TCONS_00044573-protein >TCONS_00044573-protein ID=TCONS_00044573-protein|Name=TCONS_00044573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
HTITSQNQPSVSIPLSDLIEDCELYRDFNKFGWALTERVVTRFNQKQRQF
IYDEFMKGESGSGKKTTAEAAVLKMRSCRDENNCKMFTPDEYLTKEQMAR
QFSRLTREKKKGKVIEPTQIEVVDETDVPEEEIDVLQDTMEAIKSHFEIK
ISDFVCIAITNENPKAPTRKEHFIGQVIDVDDDMIEVSYLVFKAGGYYVW
PQKADQSWVSKSEIHLKLDMPDIDRRDHLIFSETDNN Run BLAST on NCBI transcript from alignment at sc0005811:1500..2212 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044573 ID=TCONS_00044573|Name=TCONS_00044573|organism=Clytia hemisphaerica|type=transcript|length=713bp|location=Sequence derived from alignment at sc0005811:1500..2212 (Clytia hemisphaerica)
CCACACCATCACATCACAAAACCAACCATCAGTCTCCATCCCCCTCTCAG
ATTTGATTGAAGATTGCGAGTTGTACAGGGATTTCAATAAGTTTGGATGG
GCTCTTACAGAAAGAGTAGTTACCCGTTTCAACCAGAAGCAACGTCAATT
CATTTACGATGAGTTTATGAAAGGAGAGTCAGGATCCGGAAAGAAAACAA
CAGCAGAAGCTGCTGTGTTGAAAATGCGTTCTTGTAGAGATGAGAACAAC
TGTAAAATGTTTACCCCTGATGAGTACCTCACTAAGGAGCAGATGGCTCG
TCAATTTTCCCGCCTTACTCGTgagaaaaagaaaggaaaagttATCGAGC
CAACACAGATTGAAGTTGTGGATGAAACTGACGTACCAGAAGAAGAAATC
GATGTATTACAAGATACAATGGAGGCTATTAAATCACATTTTGAAATCAA
GATAAGTGATTTTGTTTGTATTGCGATAACCAATGAAAATCCCAAGGCTC
CAACAAGAAAGGAGCATTTTATTGGTCAAGttattgatgttgatgatgAT
ATGATTGAAGTGAGCTACCTTGTCTTTAAAGCAGGTGGTTACTATGTTTG
GCCACAAAAGGCTGATCAATCGTGggtttcaaaaagtgaaatccATTTGA
AACTAGATATGCCAGATATTGATCGTCGAGATCATTTGATTTTCTCTGAG
ACTGACAATAATG Coding sequence (CDS) from alignment at sc0005811:1500..2212 >TCONS_00044573 ID=TCONS_00044573|Name=TCONS_00044573|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at sc0005811:1500..2212 (Clytia hemisphaerica)
CACACCATCACATCACAAAACCAACCATCAGTCTCCATCCCCCTCTCAGA
TTTGATTGAAGATTGCGAGTTGTACAGGGATTTCAATAAGTTTGGATGGG
CTCTTACAGAAAGAGTAGTTACCCGTTTCAACCAGAAGCAACGTCAATTC
ATTTACGATGAGTTTATGAAAGGAGAGTCAGGATCCGGAAAGAAAACAAC
AGCAGAAGCTGCTGTGTTGAAAATGCGTTCTTGTAGAGATGAGAACAACT
GTAAAATGTTTACCCCTGATGAGTACCTCACTAAGGAGCAGATGGCTCGT
CAATTTTCCCGCCTTACTCGTgagaaaaagaaaggaaaagttATCGAGCC
AACACAGATTGAAGTTGTGGATGAAACTGACGTACCAGAAGAAGAAATCG
ATGTATTACAAGATACAATGGAGGCTATTAAATCACATTTTGAAATCAAG
ATAAGTGATTTTGTTTGTATTGCGATAACCAATGAAAATCCCAAGGCTCC
AACAAGAAAGGAGCATTTTATTGGTCAAGttattgatgttgatgatgATA
TGATTGAAGTGAGCTACCTTGTCTTTAAAGCAGGTGGTTACTATGTTTGG
CCACAAAAGGCTGATCAATCGTGggtttcaaaaagtgaaatccATTTGAA
ACTAGATATGCCAGATATTGATCGTCGAGATCATTTGATTTTCTCTGAGA
CTGACAATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044573-exon-sc0005811-1491911889:1500..2212 | TCONS_00044573-exon-sc0005811-1491911889:1500..2212 | Clytia hemisphaerica | exon |
| TCONS_00044573-exon-sc0005811-1510915933:1500..2212 | TCONS_00044573-exon-sc0005811-1510915933:1500..2212 | Clytia hemisphaerica | exon |
| TCONS_00044573-exon-sc0005811-1575043694:1500..2212 | TCONS_00044573-exon-sc0005811-1575043694:1500..2212 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005811 | supercontig | sc0005811:1500..2212 . |
Blast
The following BLAST results are available for this feature:
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