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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044564 ID=TCONS_00044564|Name=TCONS_00044564|organism=Clytia hemisphaerica|type=transcript|length=807bp
AAAGAACTTCAATACGAATGTAAATGGGGTTGCAAAAGGTCATTTTCAAA
GCCATCGGGAAGGTCAAATCACGAAAGAAAATGTCCGCTGAAAAGTCAAA
CTAAAGAATTCGAAGATCCTGTATCGAAAAAAACTGTCAACCTTAAAGTG
ACATCACTTAGCCTAAATAAAGAATCGTCGTCAGAACCGACAAATCCGAA
AGATTTCCAGCCAAAAGTATGGGGCAATCACACAGTGAATGACATCGATC
AGATCCTTTCTGCCGCGTTCAATGAAACCAGTCAATGGCGGAAGAATATC
TTCAACGTCCCAAGTGGTGCAGTCGGTAAAAGCTTTGTTGAGGAAATCAC
TCGCTTGATAAATTTATGGAACAATCTGTCACCTTTATCGAATGTTGCCT
TGAAAGCCCTGTCCGTGTTACCATCGCTCCTTTTACagaaaccatcaaaa
acatcgAAATCGAGAGAACATACGAAACATCTACAGCGACGTCTGGATCT
TTGGAGAGAAGGCGATTTTGACTCGTTGATCCGCGAAAGCCGAATGctac
aatcaaaattttcaaagtctgctGCTGATCGAGTTACATCAATATCGAAA
CGATTTAGTGATTTGATGTTTCAAGGCAAAGTAAACGCAGCAATCAAACT
CTTATCTAACTCAACGAATTCACACGGAATTGTACCAATCAACGATACCA
CGTTGCAAATTCTTCAGCAAAAGCATCCTAGAGGTCAACCAAAGATTGAC
GAGCTGATTGTTCAGGGACCATTCAACAAAATCGACCCCACGCTTTTTGA
AGCCATC Run BLAST on NCBI protein sequence of TCONS_00044564-protein >TCONS_00044564-protein ID=TCONS_00044564-protein|Name=TCONS_00044564-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
KELQYECKWGCKRSFSKPSGRSNHERKCPLKSQTKEFEDPVSKKTVNLKV
TSLSLNKESSSEPTNPKDFQPKVWGNHTVNDIDQILSAAFNETSQWRKNI
FNVPSGAVGKSFVEEITRLINLWNNLSPLSNVALKALSVLPSLLLQKPSK
TSKSREHTKHLQRRLDLWREGDFDSLIRESRMLQSKFSKSAADRVTSISK
RFSDLMFQGKVNAAIKLLSNSTNSHGIVPINDTTLQILQQKHPRGQPKID
ELIVQGPFNKIDPTLFEAI Run BLAST on NCBI transcript from alignment at sc0005794:2706..3512 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044564 ID=TCONS_00044564|Name=TCONS_00044564|organism=Clytia hemisphaerica|type=transcript|length=807bp|location=Sequence derived from alignment at sc0005794:2706..3512 (Clytia hemisphaerica)
GATGGCTTCAAAAAGCGTGGGGTCGATTTTGTTGAATGGTCCCTGAACAA
TCAGCTCGTCAATCTTTGGTTGACCTCTAGGATGCTTTTGCTGAAGAATT
TGCAACGTGGTATCGTTGATTGGTACAATTCCGTGTGAATTCGTTGAGTT
AGATAAGAGTTTGATTGCTGCGTTTACTTTGCCTTGAAACATCAAATCAC
TAAATCGTTTCGATATTGATGTAACTCGATCAGCagcagactttgaaaat
tttgattgtagCATTCGGCTTTCGCGGATCAACGAGTCAAAATCGCCTTC
TCTCCAAAGATCCAGACGTCGCTGTAGATGTTTCGTATGTTCTCTCGATT
TcgatgtttttgatggtttctGTAAAAGGAGCGATGGTAACACGGACAGG
GCTTTCAAGGCAACATTCGATAAAGGTGACAGATTGTTCCATAAATTTAT
CAAGCGAGTGATTTCCTCAACAAAGCTTTTACCGACTGCACCACTTGGGA
CGTTGAAGATATTCTTCCGCCATTGACTGGTTTCATTGAACGCGGCAGAA
AGGATCTGATCGATGTCATTCACTGTGTGATTGCCCCATACTTTTGGCTG
GAAATCTTTCGGATTTGTCGGTTCTGACGACGATTCTTTATTTAGGCTAA
GTGATGTCACTTTAAGGTTGACAGTTTTTTTCGATACAGGATCTTCGAAT
TCTTTAGTTTGACTTTTCAGCGGACATTTTCTTTCGTGATTTGACCTTCC
CGATGGCTTTGAAAATGACCTTTTGCAACCCCATTTACATTCGTATTGAA
GTTCTTT Coding sequence (CDS) from alignment at sc0005794:2706..3512 >TCONS_00044564 ID=TCONS_00044564|Name=TCONS_00044564|organism=Clytia hemisphaerica|type=CDS|length=807bp|location=Sequence derived from alignment at sc0005794:2706..3512 (Clytia hemisphaerica)
GATGGCTTCAAAAAGCGTGGGGTCGATTTTGTTGAATGGTCCCTGAACAA
TCAGCTCGTCAATCTTTGGTTGACCTCTAGGATGCTTTTGCTGAAGAATT
TGCAACGTGGTATCGTTGATTGGTACAATTCCGTGTGAATTCGTTGAGTT
AGATAAGAGTTTGATTGCTGCGTTTACTTTGCCTTGAAACATCAAATCAC
TAAATCGTTTCGATATTGATGTAACTCGATCAGCagcagactttgaaaat
tttgattgtagCATTCGGCTTTCGCGGATCAACGAGTCAAAATCGCCTTC
TCTCCAAAGATCCAGACGTCGCTGTAGATGTTTCGTATGTTCTCTCGATT
TcgatgtttttgatggtttctGTAAAAGGAGCGATGGTAACACGGACAGG
GCTTTCAAGGCAACATTCGATAAAGGTGACAGATTGTTCCATAAATTTAT
CAAGCGAGTGATTTCCTCAACAAAGCTTTTACCGACTGCACCACTTGGGA
CGTTGAAGATATTCTTCCGCCATTGACTGGTTTCATTGAACGCGGCAGAA
AGGATCTGATCGATGTCATTCACTGTGTGATTGCCCCATACTTTTGGCTG
GAAATCTTTCGGATTTGTCGGTTCTGACGACGATTCTTTATTTAGGCTAA
GTGATGTCACTTTAAGGTTGACAGTTTTTTTCGATACAGGATCTTCGAAT
TCTTTAGTTTGACTTTTCAGCGGACATTTTCTTTCGTGATTTGACCTTCC
CGATGGCTTTGAAAATGACCTTTTGCAACCCCATTTACATTCGTATTGAA
GTTCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044564-exon-sc0005794-1491911889:2706..3512 | TCONS_00044564-exon-sc0005794-1491911889:2706..3512 | Clytia hemisphaerica | exon |
| TCONS_00044564-exon-sc0005794-1510915933:2706..3512 | TCONS_00044564-exon-sc0005794-1510915933:2706..3512 | Clytia hemisphaerica | exon |
| TCONS_00044564-exon-sc0005794-1575043694:2706..3512 | TCONS_00044564-exon-sc0005794-1575043694:2706..3512 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005794 | supercontig | sc0005794:2706..3512 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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