TCONS_00044563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044563
Unique NameTCONS_00044563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044563 ID=TCONS_00044563|Name=TCONS_00044563|organism=Clytia hemisphaerica|type=transcript|length=367bp
gctTTTCGAAGATACTTTCCTTCCACTGGTTGGTGAACGCAAAGCATTGT
TTGAATATCAAAGTGAAAAGTTCGAGAAACACATTAGTGAAGTATCAGCC
AGTCAAAAGTTACAATTCAAATCACTATTCAAATACACGCAAGGCATCGC
ACACATTTGGGACATTCATGAAATCGGGTTGACCAAAGAAGAACGACAAC
TCCAGGAAATGCTGGATAAAAATCGTAGAGAGCACGATTATCAAAACCAG
ATCAAAGAAGCCAAACTCGATATCGTAATGGACCGTATGCGACAAGACTC
ATCGAGAGAAgCGTTGAATGGAAGTTTACATCAATCTTTAAATATGATGG
AAGGTATCAAGAAAGGG
Run BLAST on NCBI

protein sequence of TCONS_00044563-protein

>TCONS_00044563-protein ID=TCONS_00044563-protein|Name=TCONS_00044563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
LFEDTFLPLVGERKALFEYQSEKFEKHISEVSASQKLQFKSLFKYTQGIA
HIWDIHEIGLTKEERQLQEMLDKNRREHDYQNQIKEAKLDIVMDRMRQDS
SREALNGSLHQSLNMMEGIKKG
Run BLAST on NCBI

transcript from alignment at sc0005792:596..2277+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044563 ID=TCONS_00044563|Name=TCONS_00044563|organism=Clytia hemisphaerica|type=transcript|length=1682bp|location=Sequence derived from alignment at sc0005792:596..2277+ (Clytia hemisphaerica)
gctTTTCGAAGATACTTTCCTTCCACTGGTTGGTGAACGCAAAGCATTGT
TTGAATATCAAAGTGAAAAGTTCGAGGTATTGATAGaatcatttgaaaaa
tggatTCACAGACTCCTGTCAATTTTGATACTCACTAGATTCTGATTAGA
TTTTATAGGTAGTCCACTTTCATTATACCACCAATAATCTTAACATTATA
CCATAAAGATCCACTAATGAATAGCTGTAAGAGTTCATATTCTTTCTGTT
CTAAGTTCTAACTAATGGTTAGGAAATTTCGTATGAACATCCCTTGTACA
TTAACGTTAATTCTTGCTTGTATCTCACCGCTATTAGAAACACATTAGTG
AAGTATCAGCCAGTCAAAAGTTACAATTCAAATCACTATTCAAATACACG
CAAGGCATCGCACACATTTGGGACATTCATGAAATCGGGTTGACCAAAGA
AGAACGACAACTCCAGGTATGTAGGGTCACAGAACTCGTAAATCTACACC
CCTTTTTTCATAAGAGGCAGTAAAGGCCGgtatccactttcgcgcgaaat
gggcgacattttttttctcgactgtttttgcctaaagaaaagattacgtc
ataaaaaagNCACCCTTTTTTTATACGAGGCAGTAAAGGCCGGTATCCAC
TTTCGCGCgcaatgggcgacagtttttttctcgactttttttggctaaaa
aaagattacgtcataaaataTAGAGTTaaatattctcaaaaatgttcttt
taattACGCTTACTAAAGTGGCTTAAAAACGTTTGAAACTAgctttttct
ttgcttgttctgaaatctgaggctgggatagttattatttattttgaccA
AAACGAAAGTGTCATGCTCATAaacttattcttataaaaaaggaatgATA
CCAACCCGTCCAAAGGAAATTTTGACCGGTTTTCAAGTAGAGGATTCCTA
AAAAGACGCTGAAATGTACagaattcattttaattttgataatcgtttat
tcaAACTTCTaagtaaaaacaatgaaaataaagagtTTGTAAAAAGCTCA
TTATCCATACATGATAGTGGACGGACTACATAGTAATCATCGTTTGGTAC
AATgcaacttttattttttatcaactATTCGCTTTCAGGAAATGCTGGAT
AAAAATCGTAGAGAGCACGATTATCAAAACCAGATCAAAGAAGCCAAACT
CGATATCGTAATGGACCGTATGCGACAAGACTCATCGAGAGAAGTAATAT
TTTCTAAACGCTATTTTATAGATTCAAGAAAAGTAATTTACTTTAATATG
GATAATTTTCACGACATTTAAGTTCAGGCAATAtgaatttttgccttttt
ggtGACAATGAATCTCTCAAAATCGCGTGAGATTCCTTACTCGCGAAACT
AAATCtttgataaatttttgaaaCGCAAATTCCCGCAGAATAAATCTAAA
AGAAAAGTAGTGAGTTTTAACTCAGACTTTTTGAAAGTCTGTACTGGATA
ATAACACAGTTAAGTCTTTTTAACTCCAAACTTCCATAAATCgaattttt
gttcgaattatggagactatgttgtaattttataaaaaacagaTTGTTAA
AATGgttgtatttttcttttgataggCGTTGAATGGAAGTTTACATCAAT
CTTTAAATATGATGGAAGGTATCAAGAAAGGG

Coding sequence (CDS) from alignment at sc0005792:596..2277+

>TCONS_00044563 ID=TCONS_00044563|Name=TCONS_00044563|organism=Clytia hemisphaerica|type=CDS|length=1464bp|location=Sequence derived from alignment at sc0005792:596..2277+ (Clytia hemisphaerica)
ctTTTCGAAGATACTTTCCTTCCACTGGTTGGTGAACGCAAAGCATTGTT
TGAATATCAAAGTGAAAAGTTCGAGAAACACATTAGTGAAGTATCAGCCA
GTCAAAAGTTACAATTCAAATCACTATTCAAATACACGCAAGGCATCGCA
CACATTTGGGACATTCATGAAATCGGGTTGACCAAAGAAGAACGACAACT
CCAGGAAATGCTGGATAAAAATCGTAGAGAGCACGATTATCAAAACCAGA
TCAAAGAAGCCAAACTCGATATCGTAATGGACCGTATGCGACAAGACTCA
TCGAGAGAAgCGTTGAATGGAAGTTTACATCAATCTTTAAATATGATGGA
AGGTATCAAGAAAGGGctTTTCGAAGATACTTTCCTTCCACTGGTTGGTG
AACGCAAAGCATTGTTTGAATATCAAAGTGAAAAGTTCGAGAAACACATT
AGTGAAGTATCAGCCAGTCAAAAGTTACAATTCAAATCACTATTCAAATA
CACGCAAGGCATCGCACACATTTGGGACATTCATGAAATCGGGTTGACCA
AAGAAGAACGACAACTCCAGGAAATGCTGGATAAAAATCGTAGAGAGCAC
GATTATCAAAACCAGATCAAAGAAGCCAAACTCGATATCGTAATGGACCG
TATGCGACAAGACTCATCGAGAGAAgCGTTGAATGGAAGTTTACATCAAT
CTTTAAATATGATGGAAGGTATCAAGAAAGGGctTTTCGAAGATACTTTC
CTTCCACTGGTTGGTGAACGCAAAGCATTGTTTGAATATCAAAGTGAAAA
GTTCGAGAAACACATTAGTGAAGTATCAGCCAGTCAAAAGTTACAATTCA
AATCACTATTCAAATACACGCAAGGCATCGCACACATTTGGGACATTCAT
GAAATCGGGTTGACCAAAGAAGAACGACAACTCCAGGAAATGCTGGATAA
AAATCGTAGAGAGCACGATTATCAAAACCAGATCAAAGAAGCCAAACTCG
ATATCGTAATGGACCGTATGCGACAAGACTCATCGAGAGAAgCGTTGAAT
GGAAGTTTACATCAATCTTTAAATATGATGGAAGGTATCAAGAAAGGGct
TTTCGAAGATACTTTCCTTCCACTGGTTGGTGAACGCAAAGCATTGTTTG
AATATCAAAGTGAAAAGTTCGAGAAACACATTAGTGAAGTATCAGCCAGT
CAAAAGTTACAATTCAAATCACTATTCAAATACACGCAAGGCATCGCACA
CATTTGGGACATTCATGAAATCGGGTTGACCAAAGAAGAACGACAACTCC
AGGAAATGCTGGATAAAAATCGTAGAGAGCACGATTATCAAAACCAGATC
AAAGAAGCCAAACTCGATATCGTAATGGACCGTATGCGACAAGACTCATC
GAGAGAAgCGTTGAATGGAAGTTTACATCAATCTTTAAATATGATGGAAG
GTATCAAGAAAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028182XLOC_028182Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044563-exon-sc0005792-1491911889:596..671TCONS_00044563-exon-sc0005792-1491911889:596..671Clytia hemisphaericaexon
TCONS_00044563-exon-sc0005792-1510915933:596..671TCONS_00044563-exon-sc0005792-1510915933:596..671Clytia hemisphaericaexon
TCONS_00044563-exon-sc0005792-1575043694:596..671TCONS_00044563-exon-sc0005792-1575043694:596..671Clytia hemisphaericaexon
TCONS_00044563-exon-sc0005792-1491911889:933..1061TCONS_00044563-exon-sc0005792-1491911889:933..1061Clytia hemisphaericaexon
TCONS_00044563-exon-sc0005792-1510915933:933..1061TCONS_00044563-exon-sc0005792-1510915933:933..1061Clytia hemisphaericaexon
TCONS_00044563-exon-sc0005792-1575043694:933..1061TCONS_00044563-exon-sc0005792-1575043694:933..1061Clytia hemisphaericaexon
TCONS_00044563-exon-sc0005792-1491911889:1734..1838TCONS_00044563-exon-sc0005792-1491911889:1734..1838Clytia hemisphaericaexon
TCONS_00044563-exon-sc0005792-1510915933:1734..1838TCONS_00044563-exon-sc0005792-1510915933:1734..1838Clytia hemisphaericaexon
TCONS_00044563-exon-sc0005792-1575043694:1734..1838TCONS_00044563-exon-sc0005792-1575043694:1734..1838Clytia hemisphaericaexon
TCONS_00044563-exon-sc0005792-1491911889:2221..2277TCONS_00044563-exon-sc0005792-1491911889:2221..2277Clytia hemisphaericaexon
TCONS_00044563-exon-sc0005792-1510915933:2221..2277TCONS_00044563-exon-sc0005792-1510915933:2221..2277Clytia hemisphaericaexon
TCONS_00044563-exon-sc0005792-1575043694:2221..2277TCONS_00044563-exon-sc0005792-1575043694:2221..2277Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044563-proteinTCONS_00044563-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005792supercontigsc0005792:596..2277 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.56864	0.43589	0.298572	0	5.46843	4.36733	3.60538	3.37041	1.24327	0.871531	0.348342	1.05163	0	0	0.724326	0.422865	1.10709	0	0	0	1.29054	0.479241	0.799209	0.387422	0.60798	0.505729	0.579281	3.92496	0.701675	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028089DUF4455
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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