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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044560 ID=TCONS_00044560|Name=TCONS_00044560|organism=Clytia hemisphaerica|type=transcript|length=969bp
AAGTCTAACACGGAAAAAGCACGACGACCTCTTTTAGGAAAACAGGTGCT
TCGCTATGATGAAGATCACATTCTTATGCAGTTACTTAACAACTTTCTTT
CTCCATTACAGCTCTATTAGCATTCATGGCCACACATCCGAAAACAGGAA
TACGAATCGGCAACAAACCTTCGGCCATCGAACTTTTAATCTTCGTCTGG
ATTTTCAGTTTGTTTTGCCAAGAAGTCAAGCAGATGAAAAATATGGGCAA
AAAGCAATATTTCGGTTCAGGATGGAATTGGATTGACATCAATATGATCG
GCCTCGTTTTCGTGTCATACTCAATGTGGGTCATTATGTACTTCGTTAAT
CCTGAACACAAAGACGATCACTACACATTTATTTTGAGCTTTCCTGAAAG
TTTTTTCGCAGTTGCCATCATTTTGAGTTACTTTCGTATGGTGTGTTTAT
GTCAAATCACAAGATATCTTGGATTGCTACAACTCTGTCTTGGAAGAATG
TTGCAGGTGTTGTTTCAGTTCGCTTTCATTAGTATTGTGATTCTGTGTTC
GTTCTCCGTCGGTTTGGTCTTTTTGTTTCATTCATCCAAGCATTATGATT
CCATGGTTGTGAAAATGTCTCANCAATCCTGAACACAAAGACGATCACTA
CACATTTATTTTGAGCTTTCCTGAAAGTTTTTTCGCAGTTGCCATCATTT
TGAGTTACTTTCGTATGGTTTGTTTATGTCAAATCACAAGATATCTTGGA
TTGCTACAACTCTGTCTTGGAAGAATGTTACAGGTGTTGTTTCAGTTCGC
TTTCATCAGTATTGTGATTCTGTGTTCGTTCTCCGTCGGTTTGGTCTTTT
TGTTTCATTCATCCAAGCATTATGATTCCATGGTTGTGAAAATGTCTCAA
ACTGGTGAAAATGGAACTTATGTCAACCAAATGTTGAGTGGGCGTTACAA
CGGGTAAGTGAGAGGGGAC Run BLAST on NCBI transcript from alignment at sc0005788:685..2729+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044560 ID=TCONS_00044560|Name=TCONS_00044560|organism=Clytia hemisphaerica|type=transcript|length=2045bp|location=Sequence derived from alignment at sc0005788:685..2729+ (Clytia hemisphaerica)
AAGTCTAACACGGAAAAAGCACGACGACCTCTTTTAGGAAAACAGGTGCT
TCGCTATGATGAAGATCACATTCTTATGCAGTTACTTAACAACTTTCTTT
CTCCATTACAGCTCTATTAGCATTCATGGCCACACATCCGAAAACAGGAA
TACGAATCGGCAACAAACCTTCGGCCATCGAACTTTTAATCTTCGTCTGG
ATTTTCAGTTTGTTTTGCCAAGAAGTCAAGCAGGTGAGATTGAAATGTTG
GAAAGACTTGAAAAGGGTTTGAACATTCAATATATTGCTCAAGTGACAAG
TCTATGCACTTTCCTGTTATCTTTTCATGCCTGAAAAGGTATATCATGAC
ATACATTGCAAAAtacagtttttttttacttatatcTGAATTCAGTTGAC
ACACAGtattataattattatattGACGTTAGAATGACGTTTCTTTCGCG
TTTAGATGGGAGTCGGGAATAGAAACCAGCCCCCACCTTTCCACAGCAAA
ATCATACAATACTAATTACATGGTTTTTCTTTTAGATGAAAAATATGGGC
AAAAAGCAATATTTCGGTTCAGGATGGAATTGGATTGACATCAATATGAN
CCCCCATCTTTCCACAGCAAAATCATACAATACTAATTACATGGTTTTTC
TTTTAGATGAAAAATATGGGCAAAAAGCAATATTTCGGTTCAGGATGGAA
TTGGATTGACATCAATATGATCGGCCTCGTTTTCGTGTCATACTCAATGT
GGGTCATTATGTACTTCGTTAATCCTGAACACAAAGACGATCACTACACA
TTTATTTTGAGCTTTCCTGAAAGTTTTTTCGCAGTTGCCATCATTTTGAG
TTACTTTCGTATGGTGTGTTTATGTCAAATCACAAGATATCTTGGATTGC
TACAACTCTGTCTTGGAAGAATGTTGCAGGTAGGAATTGGCCCTCTCTCC
AATTAAATTTTCTTATAGAAACCAGTATATTTCGAGTGAGCCCtcacttt
tctcaaaatttagaGATGATTTTACAAAGGTTTTTCTTCCTCCCTCGAGG
ACTTACAGGTTGTGTAAGTTCTTAGCTGTTTCTGAAATCTTTTAGGTTAT
GGCCACATGAAAGCCTTTAAACGAAGGTACCTTTGTTATGGTATGAATTA
AAcgttttaatttattttcaggTGTTATTCCTGAAATCAGAGACTGaaca
atttttctgaaaattttttaggCTATGGCCAcatgaagatttttaaacga
GGGTACCTTGGCTATGGTATGAATAAGACGTTAAATAATTCTATCACTGT
GTAATTTATTTTCAGGTGTTGTTTCAGTTCGCTTTCATTAGTATTGTGAT
TCTGTGTTCGTTCTCCGTCGGTTTGGTCTTTTTGTTTCATTCATCCAAGC
ATTATGATTCCATGGTTGTGAAAATGTCTCANCAATCCTGAACACAAAGA
CGATCACTACACATTTATTTTGAGCTTTCCTGAAAGTTTTTTCGCAGTTG
CCATCATTTTGAGTTACTTTCGTATGGTTTGTTTATGTCAAATCACAAGA
TATCTTGGATTGCTACAACTCTGTCTTGGAAGAATGTTACAGGTAGGAAT
GCCCTCTCtccaatcaaacaatttttatagAAACCAGTAGATTTCGAGTG
AGCGTCCACTTTTCTCGAAATTTAGAGATGATTTTACAAAGGTTTTTCTT
CCTCTTTCTTTCCTGTAGGACCTACAGGTTGTGTAAGTTCTTAGctgttt
ctgaaaattttttaggCTATGGCCACATGAAAGCCTTTAAACGAAGGTAC
CTTGGTTATGGTATAAATAAGACGTTAAATAATTCTATCACTGTGTAATT
TATTTTCAGGTGTTGTTTCAGTTCGCTTTCATCAGTATTGTGATTCTGTG
TTCGTTCTCCGTCGGTTTGGTCTTTTTGTTTCATTCATCCAAGCATTATG
ATTCCATGGTTGTGAAAATGTCTCAAACTGGTGAAAATGGAACTTATGTC
AACCAAATGTTGAGTGGGCGTTACAACGGGTAAGTGAGAGGGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044560-exon-sc0005788-1491911889:685..917 | TCONS_00044560-exon-sc0005788-1491911889:685..917 | Clytia hemisphaerica | exon |
| TCONS_00044560-exon-sc0005788-1510915933:685..917 | TCONS_00044560-exon-sc0005788-1510915933:685..917 | Clytia hemisphaerica | exon |
| TCONS_00044560-exon-sc0005788-1575043694:685..917 | TCONS_00044560-exon-sc0005788-1575043694:685..917 | Clytia hemisphaerica | exon |
| TCONS_00044560-exon-sc0005788-1491911889:1341..1613 | TCONS_00044560-exon-sc0005788-1491911889:1341..1613 | Clytia hemisphaerica | exon |
| TCONS_00044560-exon-sc0005788-1510915933:1341..1613 | TCONS_00044560-exon-sc0005788-1510915933:1341..1613 | Clytia hemisphaerica | exon |
| TCONS_00044560-exon-sc0005788-1575043694:1341..1613 | TCONS_00044560-exon-sc0005788-1575043694:1341..1613 | Clytia hemisphaerica | exon |
| TCONS_00044560-exon-sc0005788-1491911889:2000..2276 | TCONS_00044560-exon-sc0005788-1491911889:2000..2276 | Clytia hemisphaerica | exon |
| TCONS_00044560-exon-sc0005788-1510915933:2000..2276 | TCONS_00044560-exon-sc0005788-1510915933:2000..2276 | Clytia hemisphaerica | exon |
| TCONS_00044560-exon-sc0005788-1575043694:2000..2276 | TCONS_00044560-exon-sc0005788-1575043694:2000..2276 | Clytia hemisphaerica | exon |
| TCONS_00044560-exon-sc0005788-1491911889:2544..2729 | TCONS_00044560-exon-sc0005788-1491911889:2544..2729 | Clytia hemisphaerica | exon |
| TCONS_00044560-exon-sc0005788-1510915933:2544..2729 | TCONS_00044560-exon-sc0005788-1510915933:2544..2729 | Clytia hemisphaerica | exon |
| TCONS_00044560-exon-sc0005788-1575043694:2544..2729 | TCONS_00044560-exon-sc0005788-1575043694:2544..2729 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005788 | supercontig | sc0005788:685..2729 + |
Blast
The following BLAST results are available for this feature:
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