TCONS_00044559 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044559
Unique NameTCONS_00044559
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044559 ID=TCONS_00044559|Name=TCONS_00044559|organism=Clytia hemisphaerica|type=transcript|length=459bp
TTTTCATCTCTCATTTCATTTCGTTGTTTTCGTGAGATAGCATGGATATT
CAATCGATATTTATGATGGAAGAACTCAATTTCTTTGATATGTTGacact
tttcaagaaaaactctCATAACAAAGTCTAtgtaaagattaaaaagacTT
GGGCTTTCCGGTCCTCCTTGTCGAACACCGCTCGTTGTATCAAATGTGGT
TTCTTCAAACATCAAGGAAgtttttttgtaaagtttttcaaGAATGTCAA
TTAAGATAGGATTTTGGGTATCCTTAAATCGAAGTCTGATTGAGTCGAAC
ATCCATTTTCGTGGGATGTGGTTGAACGCAGCTGATAGGTCCACGAATAC
CAGATAAAGGGGTTGCATTTTACGGTTAGAGATCTGTTGAATACGCTTGA
TATTGTAGATCCCATCTGTCGTTCCTCGATTCTGTCGAAATCCGTTTTGC
TCATCGGTC
Run BLAST on NCBI

protein sequence of TCONS_00044559-protein

>TCONS_00044559-protein ID=TCONS_00044559-protein|Name=TCONS_00044559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
TDEQNGFRQNRGTTDGIYNIKRIQQISNRKMQPLYLVFVDLSAAFNHIPR
KWMFDSIRLRFKDTQNPILIDILEKLYKKTSLMFEETTFDTTSGVRQGGP
ESPSLFNLYIDFVMRVFLEKCQHIKEIEFFHHKYRLNIHAISRKQRNEMR
DE
Run BLAST on NCBI

transcript from alignment at sc0005784:3081..3539

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044559 ID=TCONS_00044559|Name=TCONS_00044559|organism=Clytia hemisphaerica|type=transcript|length=459bp|location=Sequence derived from alignment at sc0005784:3081..3539 (Clytia hemisphaerica)
GACCGATGAGCAAAACGGATTTCGACAGAATCGAGGAACGACAGATGGGA
TCTACAATATCAAGCGTATTCAACAGATCTCTAACCGTAAAATGCAACCC
CTTTATCTGGTATTCGTGGACCTATCAGCTGCGTTCAACCACATCCCACG
AAAATGGATGTTCGACTCAATCAGACTTCGATTTAAGGATACCCAAAATC
CTATCTTAATTGACATTCttgaaaaactttacaaaaaaacTTCCTTGATG
TTTGAAGAAACCACATTTGATACAACGAGCGGTGTTCGACAAGGAGGACC
GGAAAGCCCAAgtctttttaatctttacaTAGACTTTGTTATGagagttt
ttcttgaaaagtgtCAACATATCAAAGAAATTGAGTTCTTCCATCATAAA
TATCGATTGAATATCCATGCTATCTCACGAAAACAACGAAATGAAATGAG
AGATGAAAA

Coding sequence (CDS) from alignment at sc0005784:3081..3539

>TCONS_00044559 ID=TCONS_00044559|Name=TCONS_00044559|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at sc0005784:3081..3539 (Clytia hemisphaerica)
ACCGATGAGCAAAACGGATTTCGACAGAATCGAGGAACGACAGATGGGAT
CTACAATATCAAGCGTATTCAACAGATCTCTAACCGTAAAATGCAACCCC
TTTATCTGGTATTCGTGGACCTATCAGCTGCGTTCAACCACATCCCACGA
AAATGGATGTTCGACTCAATCAGACTTCGATTTAAGGATACCCAAAATCC
TATCTTAATTGACATTCttgaaaaactttacaaaaaaacTTCCTTGATGT
TTGAAGAAACCACATTTGATACAACGAGCGGTGTTCGACAAGGAGGACCG
GAAAGCCCAAgtctttttaatctttacaTAGACTTTGTTATGagagtttt
tcttgaaaagtgtCAACATATCAAAGAAATTGAGTTCTTCCATCATAAAT
ATCGATTGAATATCCATGCTATCTCACGAAAACAACGAAATGAAATGAGA
GATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028179XLOC_028179Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044559-proteinTCONS_00044559-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044559-exon-sc0005784-1491911889:3081..3539TCONS_00044559-exon-sc0005784-1491911889:3081..3539Clytia hemisphaericaexon
TCONS_00044559-exon-sc0005784-1510915933:3081..3539TCONS_00044559-exon-sc0005784-1510915933:3081..3539Clytia hemisphaericaexon
TCONS_00044559-exon-sc0005784-1575043694:3081..3539TCONS_00044559-exon-sc0005784-1575043694:3081..3539Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005784supercontigsc0005784:3081..3539 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.196242	0.255217	0.189475	2.37887	2.91099	1.92343	3.34425	2.84519	3.62693	3.84867	2.71313	1.91703	1.90133	0	0.0864765	0	0	0	0	0	0	0	0	0.69765	0.83286	0.842921	0.20767	0.200606	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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