TCONS_00044552 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044552
Unique NameTCONS_00044552
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length765

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044552 ID=TCONS_00044552|Name=TCONS_00044552|organism=Clytia hemisphaerica|type=transcript|length=765bp
TACTGGTGTAATGACGACTACTTGTTCAAATCGAATAATAGTGTGGAGAA
CGGCAGAACAACCAGATCAATATTTGATCGAACATTTAGTTAATTCAACG
TCAGAAAAATGTCACAATGAATTGGTGTGTCATATTAAGGAAAATCAGGG
TGATGCTTCATTGAAAGGGAATTCCCTGAGTGAAGATTCCTTGAGCAGAA
ATAAGAAACAAGATTCCCTGAGAATTAGACCTGAAGGTGATTCCCTGCTT
GAAGAAAATGCTGATGTAAAAGAACCCTGCAAATGCAAGACATCAAATGA
GACGTTTTATGCAAGAGAGATTGGTTGCAAGTATGGCTTTGATCAAGCCT
GTCCTTTCTGCTTCTCCACAAGCCCAACACAACCCATCATGCTCAATTTG
ATGCAGAATACCAAAAACTTACCAGTAGGGCGGTTGATGAGGTGCAAAGG
CGGTGCACCCATCCCACCTGTACGAATACTTACAGAAAAAGAACTAGATG
AGTCGACGGAAggtgaatctgaaaattgcaaaGTCAGCGAAATTGAATAC
GAAAATATCGACGTTAACGAATATTCAAAATGGCGTGTGCTAAATACGAT
TAAATCAAAGTTCAAATTTGATATTCAAGGTAATATTCTGAAGTGGACTG
GAAACACGTGTGAGCTGCAATCTTTGAGCGGCCTCGTTTTGAAGATAAAG
ATAAAGTGTGCCAACGAAATGGAGCCTATTTGTATCATCATTAAAACAGA
AGGAAAAAGTACAGG
Run BLAST on NCBI

protein sequence of TCONS_00044552-protein

>TCONS_00044552-protein ID=TCONS_00044552-protein|Name=TCONS_00044552-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
TGVMTTTCSNRIIVWRTAEQPDQYLIEHLVNSTSEKCHNELVCHIKENQG
DASLKGNSLSEDSLSRNKKQDSLRIRPEGDSLLEENADVKEPCKCKTSNE
TFYAREIGCKYGFDQACPFCFSTSPTQPIMLNLMQNTKNLPVGRLMRCKG
GAPIPPVRILTEKELDESTEGESENCKVSEIEYENIDVNEYSKWRVLNTI
KSKFKFDIQGNILKWTGNTCELQSLSGLVLKIKIKCANEMEPICIIIKTE
GKST
Run BLAST on NCBI

transcript from alignment at sc0005765:1..2194+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044552 ID=TCONS_00044552|Name=TCONS_00044552|organism=Clytia hemisphaerica|type=transcript|length=2194bp|location=Sequence derived from alignment at sc0005765:1..2194+ (Clytia hemisphaerica)
TACTGGTGTAATGACGACTACTTGTTCAAATCGAATAATAGTGTGGAGAA
CGGCAGAACAACCAGATCAATATTTGATCGAACATTTAGTTAATTCAACG
TCAGAAAAATGTCACAATGAATTGGTGTGTCATATTAAGGAAAATCAGGG
TGATGCTTCATTGAAAGGGAATTCCCTGAGTGAAGGTAGTTCTCGCCGAA
AGAAAATTTCCCTGAAAAATAAAGGAGATTCCTTGAGCAGAAATAAGAAA
CAAGATTCCCTGAGAATTAGACCTGAAGGTGATTCCCTGCTTGAAGAAAA
TGCTGATGTAAAAGAACCCTGCAAATGCAAGACATCAAATGAGACGTTTT
ATGCAAGAGAGATTGGTTGCAAGTATGGCTTTGATCAAGGTACTTCAGAG
GAACTCTTAACTTTATCTACATAATTAGAAATTAGATATTCTTTTCCACG
ACATACTGTCAGATAGGTGAAGAAACAGGTGTCAAAGACCTCACGCTCGA
CTTTTCTAATCAATTACTGAAACTAAACGAGCTAAACAAACTAGCACGGA
TGATATAAAACCATTATTTGAGAATGGGTACTTTCTCTACAATTCAAGCT
TTGACCGGGATGTTTGGTCATTtccaaccacaaccacaacCACATAATTT
GCTGTTTTCATTCAGCCAGCCAAAGCAAAGAATATTTTAAAGTCTGTTTC
AAGAGTGGACACTTTACCTCAATTACACCACATCTTGACATCTATTACTC
ATTCACAGTTATTATAGGCGATGAAAAGGCGAAGAAGAAGAAACTTATAG
TGGTGCATATAGTTTACAAGGAGAAACTGTTAGAAATAGTAAAGTTTCCA
CATTTCCACTTTTAAGACAGACTTTGCTAACAAATATGAACCTTAAATCA
AGTTAGAACTTAATCGATATCTCGAATTCTTTAATTATTTTCATATCGAT
TTTGTATTTCAGCCTGTCCTTTCTGCTTCTCCACAAGCCCAACACAACCC
ATCATGCTCAATTTGATGCAGAATACCAAAAACTTACCAGTAGGGCGGTT
GATGAGGTGCAAAGGCGGTGCACCCATCCCACCTGTACGAATACTTACAG
AAAAAGGTATATAAACAATTATCAACTCTTACACCAAAATTACGCTTTGG
GTTCAAGCTAACCAGAGTCCAATCATTAATATTTGAACCCTCATCGGGCC
CTCATGTTATATCCACCAACTTTAATAggtgtttttgaaaatggtaccct
aatggtagacTTATCAGGTTTacatcaaatttattttttaacatgaACTA
TATGCTTTCATTAGACACCCCTGCATCAGTACAACCATCAGTACAATCGG
GATATTTGAgaaaagaagttttattttgaagGATCCCAGCTAAGATTGGG
TCGTTTGaaggacaatttttttctaattcatatATAACCATATTTCCCCT
TTAATTCTCAATTTTTCCAGAACTAGATGAGTCGACGGAAggtgaatctg
aaaattgcaaaGTCAGCGAAATTGAATACGAAAATATCGACGTTAACGAA
TATTCAAAATGGCGTGTGCTAAATACGATTAAATCAAAGTTCAAATTTGA
TATTCAAGGTAATATTCTGAAGGtaggttcaattggttcagagttgaaaa
tttaGCACTATCCATTTATCTTTTTCTAATTATTAACGCGAATATtaaga
aaatgctaaaatattttcaatcgaTCTTTTCACGCGTAGCTTCCAAAATA
ATTACTTATAGACCTTTTCAAACAatacgtcacgagcaacgctCACCTCG
TTTTCAactattgctatggtaattgagTTTATAAGAAGTTTACTCTATTA
TTAACAAAGGCAAATTTGAAAACTCGATGGATtcaatcaccttggtaatg
gtttcgaaacgaggcagtcgttgcactTGGAAGCATATCTAGGCTAAGAT
ATgggaaaattaagcatatggcaagcattacttgagcctattcgtaattt
ataaaaactaCGGTGCCCTGAGTGTTTAGTCATCAAGGTACAAAAATTAC
TTTCCAATTTCTATTTCTTTAGTGGACTGGAAACACGTGTGAGCTGCAAT
CTTTGAGCGGCCTCGTTTTGAAGATAAAGATAAAGTGTGCCAACGAAATG
GAGCCTATTTGTATCATCATTAAAACAGAAGGAAAAAGTACAGG

Coding sequence (CDS) from alignment at sc0005765:1..2194+

>TCONS_00044552 ID=TCONS_00044552|Name=TCONS_00044552|organism=Clytia hemisphaerica|type=CDS|length=3810bp|location=Sequence derived from alignment at sc0005765:1..2194+ (Clytia hemisphaerica)
ACTGGTGTAATGACGACTACTTGTTCAAATCGAATAATAGTGTGGAGAAC
GGCAGAACAACCAGATCAATATTTGATCGAACATTTAGTTAATTCAACGT
CAGAAAAATGTCACAATGAATTGGTGTGTCATATTAAGGAAAATCAGGGT
GATGCTTCATTGAAAGGGAATTCCCTGAGTGAAGATTCCTTGAGCAGAAA
TAAGAAACAAGATTCCCTGAGAATTAGACCTGAAGGTGATTCCCTGCTTG
AAGAAAATGCTGATGTAAAAGAACCCTGCAAATGCAAGACATCAAATGAG
ACGTTTTATGCAAGAGAGATTGGTTGCAAGTATGGCTTTGATCAAGCCTG
TCCTTTCTGCTTCTCCACAAGCCCAACACAACCCATCATGCTCAATTTGA
TGCAGAATACCAAAAACTTACCAGTAGGGCGGTTGATGAGGTGCAAAGGC
GGTGCACCCATCCCACCTGTACGAATACTTACAGAAAAAGAACTAGATGA
GTCGACGGAAggtgaatctgaaaattgcaaaGTCAGCGAAATTGAATACG
AAAATATCGACGTTAACGAATATTCAAAATGGCGTGTGCTAAATACGATT
AAATCAAAGTTCAAATTTGATATTCAAGGTAATATTCTGAAGTGGACTGG
AAACACGTGTGAGCTGCAATCTTTGAGCGGCCTCGTTTTGAAGATAAAGA
TAAAGTGTGCCAACGAAATGGAGCCTATTTGTATCATCATTAAAACAGAA
GGAAAAAGTACAACTGGTGTAATGACGACTACTTGTTCAAATCGAATAAT
AGTGTGGAGAACGGCAGAACAACCAGATCAATATTTGATCGAACATTTAG
TTAATTCAACGTCAGAAAAATGTCACAATGAATTGGTGTGTCATATTAAG
GAAAATCAGGGTGATGCTTCATTGAAAGGGAATTCCCTGAGTGAAGATTC
CTTGAGCAGAAATAAGAAACAAGATTCCCTGAGAATTAGACCTGAAGGTG
ATTCCCTGCTTGAAGAAAATGCTGATGTAAAAGAACCCTGCAAATGCAAG
ACATCAAATGAGACGTTTTATGCAAGAGAGATTGGTTGCAAGTATGGCTT
TGATCAAGCCTGTCCTTTCTGCTTCTCCACAAGCCCAACACAACCCATCA
TGCTCAATTTGATGCAGAATACCAAAAACTTACCAGTAGGGCGGTTGATG
AGGTGCAAAGGCGGTGCACCCATCCCACCTGTACGAATACTTACAGAAAA
AGAACTAGATGAGTCGACGGAAggtgaatctgaaaattgcaaaGTCAGCG
AAATTGAATACGAAAATATCGACGTTAACGAATATTCAAAATGGCGTGTG
CTAAATACGATTAAATCAAAGTTCAAATTTGATATTCAAGGTAATATTCT
GAAGTGGACTGGAAACACGTGTGAGCTGCAATCTTTGAGCGGCCTCGTTT
TGAAGATAAAGATAAAGTGTGCCAACGAAATGGAGCCTATTTGTATCATC
ATTAAAACAGAAGGAAAAAGTACAACTGGTGTAATGACGACTACTTGTTC
AAATCGAATAATAGTGTGGAGAACGGCAGAACAACCAGATCAATATTTGA
TCGAACATTTAGTTAATTCAACGTCAGAAAAATGTCACAATGAATTGGTG
TGTCATATTAAGGAAAATCAGGGTGATGCTTCATTGAAAGGGAATTCCCT
GAGTGAAGATTCCTTGAGCAGAAATAAGAAACAAGATTCCCTGAGAATTA
GACCTGAAGGTGATTCCCTGCTTGAAGAAAATGCTGATGTAAAAGAACCC
TGCAAATGCAAGACATCAAATGAGACGTTTTATGCAAGAGAGATTGGTTG
CAAGTATGGCTTTGATCAAGCCTGTCCTTTCTGCTTCTCCACAAGCCCAA
CACAACCCATCATGCTCAATTTGATGCAGAATACCAAAAACTTACCAGTA
GGGCGGTTGATGAGGTGCAAAGGCGGTGCACCCATCCCACCTGTACGAAT
ACTTACAGAAAAAGAACTAGATGAGTCGACGGAAggtgaatctgaaaatt
gcaaaGTCAGCGAAATTGAATACGAAAATATCGACGTTAACGAATATTCA
AAATGGCGTGTGCTAAATACGATTAAATCAAAGTTCAAATTTGATATTCA
AGGTAATATTCTGAAGTGGACTGGAAACACGTGTGAGCTGCAATCTTTGA
GCGGCCTCGTTTTGAAGATAAAGATAAAGTGTGCCAACGAAATGGAGCCT
ATTTGTATCATCATTAAAACAGAAGGAAAAAGTACAACTGGTGTAATGAC
GACTACTTGTTCAAATCGAATAATAGTGTGGAGAACGGCAGAACAACCAG
ATCAATATTTGATCGAACATTTAGTTAATTCAACGTCAGAAAAATGTCAC
AATGAATTGGTGTGTCATATTAAGGAAAATCAGGGTGATGCTTCATTGAA
AGGGAATTCCCTGAGTGAAGATTCCTTGAGCAGAAATAAGAAACAAGATT
CCCTGAGAATTAGACCTGAAGGTGATTCCCTGCTTGAAGAAAATGCTGAT
GTAAAAGAACCCTGCAAATGCAAGACATCAAATGAGACGTTTTATGCAAG
AGAGATTGGTTGCAAGTATGGCTTTGATCAAGCCTGTCCTTTCTGCTTCT
CCACAAGCCCAACACAACCCATCATGCTCAATTTGATGCAGAATACCAAA
AACTTACCAGTAGGGCGGTTGATGAGGTGCAAAGGCGGTGCACCCATCCC
ACCTGTACGAATACTTACAGAAAAAGAACTAGATGAGTCGACGGAAggtg
aatctgaaaattgcaaaGTCAGCGAAATTGAATACGAAAATATCGACGTT
AACGAATATTCAAAATGGCGTGTGCTAAATACGATTAAATCAAAGTTCAA
ATTTGATATTCAAGGTAATATTCTGAAGTGGACTGGAAACACGTGTGAGC
TGCAATCTTTGAGCGGCCTCGTTTTGAAGATAAAGATAAAGTGTGCCAAC
GAAATGGAGCCTATTTGTATCATCATTAAAACAGAAGGAAAAAGTACAAC
TGGTGTAATGACGACTACTTGTTCAAATCGAATAATAGTGTGGAGAACGG
CAGAACAACCAGATCAATATTTGATCGAACATTTAGTTAATTCAACGTCA
GAAAAATGTCACAATGAATTGGTGTGTCATATTAAGGAAAATCAGGGTGA
TGCTTCATTGAAAGGGAATTCCCTGAGTGAAGATTCCTTGAGCAGAAATA
AGAAACAAGATTCCCTGAGAATTAGACCTGAAGGTGATTCCCTGCTTGAA
GAAAATGCTGATGTAAAAGAACCCTGCAAATGCAAGACATCAAATGAGAC
GTTTTATGCAAGAGAGATTGGTTGCAAGTATGGCTTTGATCAAGCCTGTC
CTTTCTGCTTCTCCACAAGCCCAACACAACCCATCATGCTCAATTTGATG
CAGAATACCAAAAACTTACCAGTAGGGCGGTTGATGAGGTGCAAAGGCGG
TGCACCCATCCCACCTGTACGAATACTTACAGAAAAAGAACTAGATGAGT
CGACGGAAggtgaatctgaaaattgcaaaGTCAGCGAAATTGAATACGAA
AATATCGACGTTAACGAATATTCAAAATGGCGTGTGCTAAATACGATTAA
ATCAAAGTTCAAATTTGATATTCAAGGTAATATTCTGAAGTGGACTGGAA
ACACGTGTGAGCTGCAATCTTTGAGCGGCCTCGTTTTGAAGATAAAGATA
AAGTGTGCCAACGAAATGGAGCCTATTTGTATCATCATTAAAACAGAAGG
AAAAAGTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028173XLOC_028173Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044552-exon-sc0005765-1491911889:1..185TCONS_00044552-exon-sc0005765-1491911889:1..185Clytia hemisphaericaexon
TCONS_00044552-exon-sc0005765-1510915933:1..185TCONS_00044552-exon-sc0005765-1510915933:1..185Clytia hemisphaericaexon
TCONS_00044552-exon-sc0005765-1575043694:1..185TCONS_00044552-exon-sc0005765-1575043694:1..185Clytia hemisphaericaexon
TCONS_00044552-exon-sc0005765-1491911889:228..389TCONS_00044552-exon-sc0005765-1491911889:228..389Clytia hemisphaericaexon
TCONS_00044552-exon-sc0005765-1510915933:228..389TCONS_00044552-exon-sc0005765-1510915933:228..389Clytia hemisphaericaexon
TCONS_00044552-exon-sc0005765-1575043694:228..389TCONS_00044552-exon-sc0005765-1575043694:228..389Clytia hemisphaericaexon
TCONS_00044552-exon-sc0005765-1491911889:963..1106TCONS_00044552-exon-sc0005765-1491911889:963..1106Clytia hemisphaericaexon
TCONS_00044552-exon-sc0005765-1510915933:963..1106TCONS_00044552-exon-sc0005765-1510915933:963..1106Clytia hemisphaericaexon
TCONS_00044552-exon-sc0005765-1575043694:963..1106TCONS_00044552-exon-sc0005765-1575043694:963..1106Clytia hemisphaericaexon
TCONS_00044552-exon-sc0005765-1491911889:1471..1622TCONS_00044552-exon-sc0005765-1491911889:1471..1622Clytia hemisphaericaexon
TCONS_00044552-exon-sc0005765-1510915933:1471..1622TCONS_00044552-exon-sc0005765-1510915933:1471..1622Clytia hemisphaericaexon
TCONS_00044552-exon-sc0005765-1575043694:1471..1622TCONS_00044552-exon-sc0005765-1575043694:1471..1622Clytia hemisphaericaexon
TCONS_00044552-exon-sc0005765-1491911889:2073..2194TCONS_00044552-exon-sc0005765-1491911889:2073..2194Clytia hemisphaericaexon
TCONS_00044552-exon-sc0005765-1510915933:2073..2194TCONS_00044552-exon-sc0005765-1510915933:2073..2194Clytia hemisphaericaexon
TCONS_00044552-exon-sc0005765-1575043694:2073..2194TCONS_00044552-exon-sc0005765-1575043694:2073..2194Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044552-proteinTCONS_00044552-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005765supercontigsc0005765:1..2194 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.430249	0.61198	0	3.53287	2.04328	1.8649	0.775763	1.06241	4.6681	3.61387	4.3117	3.43585	2.92197	2.70034	4.61246	3.69093	3.26978	1.89581	2.04854	2.12848	2.19228	2.4457	0.437473	0	3.3995	3.68002
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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