TCONS_00044540 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044540
Unique NameTCONS_00044540
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length952

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044540 ID=TCONS_00044540|Name=TCONS_00044540|organism=Clytia hemisphaerica|type=transcript|length=952bp
tgtttttagaATGACAATTAACAAATAAAATCAGAATAAATATGGTTGGA
AAGCAAAATGAAATCTGTACTGAGACTTGTATTATTGTTGATCATGCAGC
TGTCTTTCTTGAGGAATCTGGAGCTAAACTTGAACTAGATACAAATCCAA
AGAATAAGAACTTGTTATCATTTCTCTCAAACATCAGTAAATCAACTTGG
ACTTGTATCGTGGAGGGAGTGATAGAATATTGTAGAATCATATATGACAT
ATCAACAAACTATAAGgTGCTAGTCCTTTGCTCAAATGAAAACTCTATCA
ATATCAATGACTTTGAAGATCAATATCAAAACATACAACAGgttCTAAAA
GGTTTTGGTGATCTTGGACCTCCAAACAAGGAAACAGAGGCGAATCCATC
CATATACAATGGTGTTGATCATGCAGCTAAAGAACTGATCAAAATATCTT
CTGAATCTTCTATTCGATCTACAAAGAGAATAATTGTCATTACTTCTTTG
GAAGATGAAAGTGATGCAAGATCAATCAGCAATGTTATTTGGGAAATACA
AAATGAACATGATAAAAAGGGattttgTGACATAGATTTACTGGTTGTCA
ACATCACATTAAAGGGTCCAGAAATCATAATTCCACTGAAAGAGGTCTCA
CCACACCTTCATATGGCAGCGATCACAATGGAAGCAGAACATTGCTCAAA
ACTTATTCCTCTGTTGACAAGAAAGCATTATTGTTTGAGGTCAACCATTA
TCACTGGTATACCAATGAAGGAAGAGCAACACGCAGGTACATCTGCGAAT
TACGATGTTGAAATCATCCATTCAGCTGCTGCCCATCATGAGGGTGATTG
GCTTTATACGTACCAAAATTCACCGAATATACTGGAAGATGCCAACAAAT
CAATCGTAACTTTGAAATGGTGCACACCGAAAGCCAATTCTTTGCAAGGT
TT
Run BLAST on NCBI

protein sequence of TCONS_00044540-protein

>TCONS_00044540-protein ID=TCONS_00044540-protein|Name=TCONS_00044540-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MVGKQNEICTETCIIVDHAAVFLEESGAKLELDTNPKNKNLLSFLSNISK
STWTCIVEGVIEYCRIIYDISTNYKVLVLCSNENSININDFEDQYQNIQQ
VLKGFGDLGPPNKETEANPSIYNGVDHAAKELIKISSESSIRSTKRIIVI
TSLEDESDARSISNVIWEIQNEHDKKGFCDIDLLVVNITLKGPEIIIPLK
EVSPHLHMAAITMEAEHCSKLIPLLTRKHYCLRSTIITGIPMKEEQHAGT
SANYDVEIIHSAAAHHEGDWLYTYQNSPNILEDANKSIVTLKWCTPKANS
LQG
Run BLAST on NCBI

transcript from alignment at sc0005747:274..3249-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044540 ID=TCONS_00044540|Name=TCONS_00044540|organism=Clytia hemisphaerica|type=transcript|length=2976bp|location=Sequence derived from alignment at sc0005747:274..3249- (Clytia hemisphaerica)
TGTTTTTAGAATGACAATTAACAAATAAAATCAGAATAAATATGGTTGGA
AAGCAAAATGAAATCTGTACTGAGACTTGTATTATTGTTGATCATGCAGC
TGTCTTTCTTGAGGAATCTGGAGCTAAACTTGAACTAGATACAAATCCAA
AGAATAAGAACTTGTTATCATTTCTCTCAAACATCAGTAAATCAACTTGG
ACTTGTATCGTGGAGGGAGTGATAGAATATTGTAGAATCATATATGACAT
ATCAACAAACTATAAGGTAATCTGTGTTTGCCGTTTTATTAGATTTTGGT
TTGTTTCTTTTAATCTTATTGGATTCCATATATTTTGTATTAGACTGTAC
TTCATGTAAGGGATGTAAGTGAATCATATTAGTTAACAAAAAATAAATAA
TTAAAAGTAAAAAATATATATCAAATATATATATATCTTTAAAAATAGAG
ATAGTTACTTGGAAGTCTTCAAAAATCTACTTCAAAGGGCTTAAAAAAGA
TTGAATTGTGGAAAAATTGACAATAAAATTCTAACTTCATTTTATTTTAG
GTGCTAGTCCTTTGCTCAAATGAAAACTCTATCAATATCAATGACTTTGA
AGATCAATATCAAAACATACAACAGGTAGTTAAACATTTATTGCTACCAG
GGAGGATTATTGAGTATGTTTGCAGTATTTCTCGTCAAATTGTTCTATCT
GAAACAAACTCTAAGATAATCATTTTTATCGAATTCTCTTTAGAGAGGAA
ATACCTACAGTTTGGACATGAATGATTATAATCCTCCCAAATTATCTATA
ACTCTCTCGGGTATTCAATTTTCGTTTGGACAACATATGGGAAATTATTT
ATTTGAATTTAAAAAATTAGGTTCTAAAAGGTTTTGGTGATCTTGGACCT
CCAAACAAGGAAACAGAGGCGAATCCATCCATATACAATGGTGTTGATCA
TGCAGCTAAAGAACTGATCAAAATATCTTCTGAATCTTCTATTCGATCTA
CAAAGAGAATAATTGTCATTACTTCTTTGGAAGAGTAAGCTCGTATTTGT
TTATGAAGATTGGGTGATTTTACTGTTAGCTTTTCTGATTTATCTGTATT
TGCGAAGAAAGAATTTCCGTCAACTATATTCAATAAGGAGAACTGAGTTA
CAGAGCAGCGTTTCAGACTTATTTACATTGCATTTTGGTTATGTCCATAT
CGCATTAGTCAGCCTTTGTGCATAGGACTTAAAGTTATTATTTTAGGGTC
CATTGTATACATTTTTAATTATCTATTTAGTGAAAGTGATGCAAGATCAA
TCAGCAATGTTATTTGGGAAATACAAAATGAACATGATAAAAAGGGGTAT
ACTGTTTTAGATACTTTATTTAATTTACTTTATTTAATTTTGATTCTTTT
CTTCCCTTCCCTCTCTACCTGTCTCTACTAAATATACGGTATGATTTTAT
TGATTTTTTTCTTATTCATTCATTTTGTTTTAGATTTTGTGACATAGATT
TACTGGTTGTCAACATCACATTAAAGGGTCCAGAAATCATAATTCCACTG
AAAGAGGTAAAACTAAAAAGAAAATAATCAATTCAAACAATTAACTTTTT
AAGAATAATCTTTAGCTTGATGTCAGGTGCTTATTTCAGCAAACTAAAAT
GACATTTCTACAATACCAAATTATATTATGTCACATAACATGATGTTGAT
CAGTTGCAAGGGTATCAATAATGGAATACCAGCACAATAGTTTATTTAGC
AAACTTTTGTTGCTTGTAGGTCTCACCACACCTTCATATGGCAGCGATCA
CAATGGAAGCAGAACATTGCTCAAAACTTATTCCTCTGTTGACAAGAAAG
CATTATTGTTTGAGGTCAACCATTATCACTGGTATACCAATGAAGGTAAG
ATGTTTCATATATAGTGGATGTGTAGGAAAATTTTTGAAAGGCAAATTTC
TCTCAGAAAAAACCACCGTATGGGTCGACTTATTGCTAGAGTTAGGGCCT
GATTTTGAAGCACTGCTTTTTTTCTGCACATTATGGCTGTTTTCAAAGTG
AGTGCACTCGGAAATGAGTCCAATACTTAGAGCTCGTTTGTTTGATTGTT
TACAATTCACTGTTTGTTTTTTGTTTCACAAAATCTTTCTTAGGAAGAGC
AACACGCAGGTACATCTGCGAATTACGATGTTGAAATCATCCATTCAGCT
GCTGCCCATCATGAGGGTGATTGGCTTTGTAAGTCTACACTATAAACAAC
GGGATAAGCTGGAGTTTTTATAAGATACTTCACTAATTGGTCATTTGAAA
TAATAGAGATGACGCGTTCTTTAGAAAAAGCAATAAAATCCTTTGTCNAA
GATACTTCACTAATTGGTCATTTGAAATAATAGAGATGACGCGTTCTTTA
GAAAAAGCAATAAAATCCTTTGTCTCAAGATTCAACGACTAACTGAATCA
TCGAAAACCTTGTAAAAACTCCAGCTTGACCCTAAACAACCGGCCAGTCC
AAAGTATTTAAATATCTAGAGAACAAAATGAGTAATTTTTTGATCAAGGG
GTGAAGATTGCTTGAAAATGCATTGGGGTATTTCCTGGTTGCTACAGGCC
TATAAATCAAGATAATATGAGCTCAGATCAGACATTCAGTTGATGCTATT
CAACAGCTGTCACCAGCTATTCAAATGAAATAATATAGTTATTTGATAAA
AGTTTCTTTCTTTTCAGTTTAAAATGGTTTCATAGATCTTATTATGGGCC
CTAAATCATCAATTGATGCCCACATCATCATCGCAAAATCACAAAAATAA
ACATTAAAAAACATCTTTTGTCAAAAAGTTTTACATCTGTATCTAGTCAA
GCTTTTTCTCTAATTATTTGATTGTAAAGATACGTACCAAAATTCACCGA
ATATACTGGAAGATGCCAACAAATCAATCGTAACTTTGAAATGGTGCACA
CCGAAAGCCAATTCTTTGCAAGGTTT

Coding sequence (CDS) from alignment at sc0005747:274..3249-

>TCONS_00044540 ID=TCONS_00044540|Name=TCONS_00044540|organism=Clytia hemisphaerica|type=CDS|length=7272bp|location=Sequence derived from alignment at sc0005747:274..3249- (Clytia hemisphaerica)
ATACGTACCAAAATTCACCGAATATACTGGAAGATGCCAACAAATCAATC
GTAACTTTGAAATGGTGCACACCGAAAGCCAATTCTTTGCAAGGTGAAGA
GCAACACGCAGGTACATCTGCGAATTACGATGTTGAAATCATCCATTCAG
CTGCTGCCCATCATGAGGGTGATTGGCTTTGTCTCACCACACCTTCATAT
GGCAGCGATCACAATGGAAGCAGAACATTGCTCAAAACTTATTCCTCTGT
TGACAAGAAAGCATTATTGTTTGAGGTCAACCATTATCACTGGTATACCA
ATGAAGATTTTGTGACATAGATTTACTGGTTGTCAACATCACATTAAAGG
GTCCAGAAATCATAATTCCACTGAAAGAGTGAAAGTGATGCAAGATCAAT
CAGCAATGTTATTTGGGAAATACAAAATGAACATGATAAAAAGGGGTTCT
AAAAGGTTTTGGTGATCTTGGACCTCCAAACAAGGAAACAGAGGCGAATC
CATCCATATACAATGGTGTTGATCATGCAGCTAAAGAACTGATCAAAATA
TCTTCTGAATCTTCTATTCGATCTACAAAGAGAATAATTGTCATTACTTC
TTTGGAAGAGTGCTAGTCCTTTGCTCAAATGAAAACTCTATCAATATCAA
TGACTTTGAAGATCAATATCAAAACATACAACAGATGGTTGGAAAGCAAA
ATGAAATCTGTACTGAGACTTGTATTATTGTTGATCATGCAGCTGTCTTT
CTTGAGGAATCTGGAGCTAAACTTGAACTAGATACAAATCCAAAGAATAA
GAACTTGTTATCATTTCTCTCAAACATCAGTAAATCAACTTGGACTTGTA
TCGTGGAGGGAGTGATAGAATATTGTAGAATCATATATGACATATCAACA
AACTATAAGATACGTACCAAAATTCACCGAATATACTGGAAGATGCCAAC
AAATCAATCGTAACTTTGAAATGGTGCACACCGAAAGCCAATTCTTTGCA
AGGTGAAGAGCAACACGCAGGTACATCTGCGAATTACGATGTTGAAATCA
TCCATTCAGCTGCTGCCCATCATGAGGGTGATTGGCTTTGTCTCACCACA
CCTTCATATGGCAGCGATCACAATGGAAGCAGAACATTGCTCAAAACTTA
TTCCTCTGTTGACAAGAAAGCATTATTGTTTGAGGTCAACCATTATCACT
GGTATACCAATGAAGATTTTGTGACATAGATTTACTGGTTGTCAACATCA
CATTAAAGGGTCCAGAAATCATAATTCCACTGAAAGAGTGAAAGTGATGC
AAGATCAATCAGCAATGTTATTTGGGAAATACAAAATGAACATGATAAAA
AGGGGTTCTAAAAGGTTTTGGTGATCTTGGACCTCCAAACAAGGAAACAG
AGGCGAATCCATCCATATACAATGGTGTTGATCATGCAGCTAAAGAACTG
ATCAAAATATCTTCTGAATCTTCTATTCGATCTACAAAGAGAATAATTGT
CATTACTTCTTTGGAAGAGTGCTAGTCCTTTGCTCAAATGAAAACTCTAT
CAATATCAATGACTTTGAAGATCAATATCAAAACATACAACAGATGGTTG
GAAAGCAAAATGAAATCTGTACTGAGACTTGTATTATTGTTGATCATGCA
GCTGTCTTTCTTGAGGAATCTGGAGCTAAACTTGAACTAGATACAAATCC
AAAGAATAAGAACTTGTTATCATTTCTCTCAAACATCAGTAAATCAACTT
GGACTTGTATCGTGGAGGGAGTGATAGAATATTGTAGAATCATATATGAC
ATATCAACAAACTATAAGATACGTACCAAAATTCACCGAATATACTGGAA
GATGCCAACAAATCAATCGTAACTTTGAAATGGTGCACACCGAAAGCCAA
TTCTTTGCAAGGTGAAGAGCAACACGCAGGTACATCTGCGAATTACGATG
TTGAAATCATCCATTCAGCTGCTGCCCATCATGAGGGTGATTGGCTTTGT
CTCACCACACCTTCATATGGCAGCGATCACAATGGAAGCAGAACATTGCT
CAAAACTTATTCCTCTGTTGACAAGAAAGCATTATTGTTTGAGGTCAACC
ATTATCACTGGTATACCAATGAAGATTTTGTGACATAGATTTACTGGTTG
TCAACATCACATTAAAGGGTCCAGAAATCATAATTCCACTGAAAGAGTGA
AAGTGATGCAAGATCAATCAGCAATGTTATTTGGGAAATACAAAATGAAC
ATGATAAAAAGGGGTTCTAAAAGGTTTTGGTGATCTTGGACCTCCAAACA
AGGAAACAGAGGCGAATCCATCCATATACAATGGTGTTGATCATGCAGCT
AAAGAACTGATCAAAATATCTTCTGAATCTTCTATTCGATCTACAAAGAG
AATAATTGTCATTACTTCTTTGGAAGAGTGCTAGTCCTTTGCTCAAATGA
AAACTCTATCAATATCAATGACTTTGAAGATCAATATCAAAACATACAAC
AGATGGTTGGAAAGCAAAATGAAATCTGTACTGAGACTTGTATTATTGTT
GATCATGCAGCTGTCTTTCTTGAGGAATCTGGAGCTAAACTTGAACTAGA
TACAAATCCAAAGAATAAGAACTTGTTATCATTTCTCTCAAACATCAGTA
AATCAACTTGGACTTGTATCGTGGAGGGAGTGATAGAATATTGTAGAATC
ATATATGACATATCAACAAACTATAAGATACGTACCAAAATTCACCGAAT
ATACTGGAAGATGCCAACAAATCAATCGTAACTTTGAAATGGTGCACACC
GAAAGCCAATTCTTTGCAAGGTGAAGAGCAACACGCAGGTACATCTGCGA
ATTACGATGTTGAAATCATCCATTCAGCTGCTGCCCATCATGAGGGTGAT
TGGCTTTGTCTCACCACACCTTCATATGGCAGCGATCACAATGGAAGCAG
AACATTGCTCAAAACTTATTCCTCTGTTGACAAGAAAGCATTATTGTTTG
AGGTCAACCATTATCACTGGTATACCAATGAAGATTTTGTGACATAGATT
TACTGGTTGTCAACATCACATTAAAGGGTCCAGAAATCATAATTCCACTG
AAAGAGTGAAAGTGATGCAAGATCAATCAGCAATGTTATTTGGGAAATAC
AAAATGAACATGATAAAAAGGGGTTCTAAAAGGTTTTGGTGATCTTGGAC
CTCCAAACAAGGAAACAGAGGCGAATCCATCCATATACAATGGTGTTGAT
CATGCAGCTAAAGAACTGATCAAAATATCTTCTGAATCTTCTATTCGATC
TACAAAGAGAATAATTGTCATTACTTCTTTGGAAGAGTGCTAGTCCTTTG
CTCAAATGAAAACTCTATCAATATCAATGACTTTGAAGATCAATATCAAA
ACATACAACAGATGGTTGGAAAGCAAAATGAAATCTGTACTGAGACTTGT
ATTATTGTTGATCATGCAGCTGTCTTTCTTGAGGAATCTGGAGCTAAACT
TGAACTAGATACAAATCCAAAGAATAAGAACTTGTTATCATTTCTCTCAA
ACATCAGTAAATCAACTTGGACTTGTATCGTGGAGGGAGTGATAGAATAT
TGTAGAATCATATATGACATATCAACAAACTATAAGATACGTACCAAAAT
TCACCGAATATACTGGAAGATGCCAACAAATCAATCGTAACTTTGAAATG
GTGCACACCGAAAGCCAATTCTTTGCAAGGTGAAGAGCAACACGCAGGTA
CATCTGCGAATTACGATGTTGAAATCATCCATTCAGCTGCTGCCCATCAT
GAGGGTGATTGGCTTTGTCTCACCACACCTTCATATGGCAGCGATCACAA
TGGAAGCAGAACATTGCTCAAAACTTATTCCTCTGTTGACAAGAAAGCAT
TATTGTTTGAGGTCAACCATTATCACTGGTATACCAATGAAGATTTTGTG
ACATAGATTTACTGGTTGTCAACATCACATTAAAGGGTCCAGAAATCATA
ATTCCACTGAAAGAGTGAAAGTGATGCAAGATCAATCAGCAATGTTATTT
GGGAAATACAAAATGAACATGATAAAAAGGGGTTCTAAAAGGTTTTGGTG
ATCTTGGACCTCCAAACAAGGAAACAGAGGCGAATCCATCCATATACAAT
GGTGTTGATCATGCAGCTAAAGAACTGATCAAAATATCTTCTGAATCTTC
TATTCGATCTACAAAGAGAATAATTGTCATTACTTCTTTGGAAGAGTGCT
AGTCCTTTGCTCAAATGAAAACTCTATCAATATCAATGACTTTGAAGATC
AATATCAAAACATACAACAGATGGTTGGAAAGCAAAATGAAATCTGTACT
GAGACTTGTATTATTGTTGATCATGCAGCTGTCTTTCTTGAGGAATCTGG
AGCTAAACTTGAACTAGATACAAATCCAAAGAATAAGAACTTGTTATCAT
TTCTCTCAAACATCAGTAAATCAACTTGGACTTGTATCGTGGAGGGAGTG
ATAGAATATTGTAGAATCATATATGACATATCAACAAACTATAAGATACG
TACCAAAATTCACCGAATATACTGGAAGATGCCAACAAATCAATCGTAAC
TTTGAAATGGTGCACACCGAAAGCCAATTCTTTGCAAGGTGAAGAGCAAC
ACGCAGGTACATCTGCGAATTACGATGTTGAAATCATCCATTCAGCTGCT
GCCCATCATGAGGGTGATTGGCTTTGTCTCACCACACCTTCATATGGCAG
CGATCACAATGGAAGCAGAACATTGCTCAAAACTTATTCCTCTGTTGACA
AGAAAGCATTATTGTTTGAGGTCAACCATTATCACTGGTATACCAATGAA
GATTTTGTGACATAGATTTACTGGTTGTCAACATCACATTAAAGGGTCCA
GAAATCATAATTCCACTGAAAGAGTGAAAGTGATGCAAGATCAATCAGCA
ATGTTATTTGGGAAATACAAAATGAACATGATAAAAAGGGGTTCTAAAAG
GTTTTGGTGATCTTGGACCTCCAAACAAGGAAACAGAGGCGAATCCATCC
ATATACAATGGTGTTGATCATGCAGCTAAAGAACTGATCAAAATATCTTC
TGAATCTTCTATTCGATCTACAAAGAGAATAATTGTCATTACTTCTTTGG
AAGAGTGCTAGTCCTTTGCTCAAATGAAAACTCTATCAATATCAATGACT
TTGAAGATCAATATCAAAACATACAACAGATGGTTGGAAAGCAAAATGAA
ATCTGTACTGAGACTTGTATTATTGTTGATCATGCAGCTGTCTTTCTTGA
GGAATCTGGAGCTAAACTTGAACTAGATACAAATCCAAAGAATAAGAACT
TGTTATCATTTCTCTCAAACATCAGTAAATCAACTTGGACTTGTATCGTG
GAGGGAGTGATAGAATATTGTAGAATCATATATGACATATCAACAAACTA
TAAGATACGTACCAAAATTCACCGAATATACTGGAAGATGCCAACAAATC
AATCGTAACTTTGAAATGGTGCACACCGAAAGCCAATTCTTTGCAAGGTG
AAGAGCAACACGCAGGTACATCTGCGAATTACGATGTTGAAATCATCCAT
TCAGCTGCTGCCCATCATGAGGGTGATTGGCTTTGTCTCACCACACCTTC
ATATGGCAGCGATCACAATGGAAGCAGAACATTGCTCAAAACTTATTCCT
CTGTTGACAAGAAAGCATTATTGTTTGAGGTCAACCATTATCACTGGTAT
ACCAATGAAGATTTTGTGACATAGATTTACTGGTTGTCAACATCACATTA
AAGGGTCCAGAAATCATAATTCCACTGAAAGAGTGAAAGTGATGCAAGAT
CAATCAGCAATGTTATTTGGGAAATACAAAATGAACATGATAAAAAGGGG
TTCTAAAAGGTTTTGGTGATCTTGGACCTCCAAACAAGGAAACAGAGGCG
AATCCATCCATATACAATGGTGTTGATCATGCAGCTAAAGAACTGATCAA
AATATCTTCTGAATCTTCTATTCGATCTACAAAGAGAATAATTGTCATTA
CTTCTTTGGAAGAGTGCTAGTCCTTTGCTCAAATGAAAACTCTATCAATA
TCAATGACTTTGAAGATCAATATCAAAACATACAACAGATGGTTGGAAAG
CAAAATGAAATCTGTACTGAGACTTGTATTATTGTTGATCATGCAGCTGT
CTTTCTTGAGGAATCTGGAGCTAAACTTGAACTAGATACAAATCCAAAGA
ATAAGAACTTGTTATCATTTCTCTCAAACATCAGTAAATCAACTTGGACT
TGTATCGTGGAGGGAGTGATAGAATATTGTAGAATCATATATGACATATC
AACAAACTATAAGATACGTACCAAAATTCACCGAATATACTGGAAGATGC
CAACAAATCAATCGTAACTTTGAAATGGTGCACACCGAAAGCCAATTCTT
TGCAAGGTGAAGAGCAACACGCAGGTACATCTGCGAATTACGATGTTGAA
ATCATCCATTCAGCTGCTGCCCATCATGAGGGTGATTGGCTTTGTCTCAC
CACACCTTCATATGGCAGCGATCACAATGGAAGCAGAACATTGCTCAAAA
CTTATTCCTCTGTTGACAAGAAAGCATTATTGTTTGAGGTCAACCATTAT
CACTGGTATACCAATGAAGATTTTGTGACATAGATTTACTGGTTGTCAAC
ATCACATTAAAGGGTCCAGAAATCATAATTCCACTGAAAGAGTGAAAGTG
ATGCAAGATCAATCAGCAATGTTATTTGGGAAATACAAAATGAACATGAT
AAAAAGGGGTTCTAAAAGGTTTTGGTGATCTTGGACCTCCAAACAAGGAA
ACAGAGGCGAATCCATCCATATACAATGGTGTTGATCATGCAGCTAAAGA
ACTGATCAAAATATCTTCTGAATCTTCTATTCGATCTACAAAGAGAATAA
TTGTCATTACTTCTTTGGAAGAGTGCTAGTCCTTTGCTCAAATGAAAACT
CTATCAATATCAATGACTTTGAAGATCAATATCAAAACATACAACAGATG
GTTGGAAAGCAAAATGAAATCTGTACTGAGACTTGTATTATTGTTGATCA
TGCAGCTGTCTTTCTTGAGGAATCTGGAGCTAAACTTGAACTAGATACAA
ATCCAAAGAATAAGAACTTGTTATCATTTCTCTCAAACATCAGTAAATCA
ACTTGGACTTGTATCGTGGAGGGAGTGATAGAATATTGTAGAATCATATA
TGACATATCAACAAACTATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028162XLOC_028162Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044540-exon-sc0005747-1575043694:2984..3249TCONS_00044540-exon-sc0005747-1575043694:2984..3249Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1575043694:2625..2699TCONS_00044540-exon-sc0005747-1575043694:2625..2699Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1575043694:2216..2379TCONS_00044540-exon-sc0005747-1575043694:2216..2379Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1575043694:1904..1969TCONS_00044540-exon-sc0005747-1575043694:1904..1969Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1575043694:1694..1766TCONS_00044540-exon-sc0005747-1575043694:1694..1766Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1575043694:1355..1480TCONS_00044540-exon-sc0005747-1575043694:1355..1480Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1575043694:1022..1106TCONS_00044540-exon-sc0005747-1575043694:1022..1106Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1575043694:274..370TCONS_00044540-exon-sc0005747-1575043694:274..370Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1510915933:2984..3249TCONS_00044540-exon-sc0005747-1510915933:2984..3249Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1510915933:2625..2699TCONS_00044540-exon-sc0005747-1510915933:2625..2699Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1510915933:2216..2379TCONS_00044540-exon-sc0005747-1510915933:2216..2379Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1510915933:1904..1969TCONS_00044540-exon-sc0005747-1510915933:1904..1969Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1510915933:1694..1766TCONS_00044540-exon-sc0005747-1510915933:1694..1766Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1510915933:1355..1480TCONS_00044540-exon-sc0005747-1510915933:1355..1480Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1510915933:1022..1106TCONS_00044540-exon-sc0005747-1510915933:1022..1106Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1510915933:274..370TCONS_00044540-exon-sc0005747-1510915933:274..370Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1491911889:2984..3249TCONS_00044540-exon-sc0005747-1491911889:2984..3249Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1491911889:2625..2699TCONS_00044540-exon-sc0005747-1491911889:2625..2699Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1491911889:2216..2379TCONS_00044540-exon-sc0005747-1491911889:2216..2379Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1491911889:1904..1969TCONS_00044540-exon-sc0005747-1491911889:1904..1969Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1491911889:1694..1766TCONS_00044540-exon-sc0005747-1491911889:1694..1766Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1491911889:1355..1480TCONS_00044540-exon-sc0005747-1491911889:1355..1480Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1491911889:1022..1106TCONS_00044540-exon-sc0005747-1491911889:1022..1106Clytia hemisphaericaexon
TCONS_00044540-exon-sc0005747-1491911889:274..370TCONS_00044540-exon-sc0005747-1491911889:274..370Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044540-proteinTCONS_00044540-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005747supercontigsc0005747:274..3249 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
42.5924	35.1551	19.7334	14.1225	27.6244	19.7938	24.7399	26.667	16.94	18.5905	16.0126	12.0843	12.6709	12.895	12.6621	13.0646	14.9833	18.7375	9.64413	12.4821	20.6365	19.9289	32.8491	28.4211	16.2514	18.2558	9.95202	7.68629	21.0932	25.2704
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019355Cell_cycle_regulator_Mat89Bb
Blast
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BLAST of TCONS_00044540 vs. Swiss-Prot (Human)
Match: INT13 (Integrator complex subunit 13 OS=Homo sapiens GN=INTS13 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.418e-33
Identity = 103/324 (31.79%), Postives = 168/324 (51.85%), Query Frame = 3 
Query:   72 ETCIIVDHAAVFLEESGAKLELDTNPKNKNL-LSFLSNISKSTWTCIVEGVIEYCRIIYDISTNYKVL-VLCSNENSININDFEDQYQNIQQVLKGFGDLGPPNKETEANP---SIYNGV-------------DHAAKELXXXXXXXXXXXXXXXXVITSLEDESDARSISNVIWEIQNEHDKKG--------FCDIDLLVVNITLKGPEIIIP---LKEVSPHLHMAAITMEA-EHCSKLIPLLTRKHYCLRSTIITGIPMKEEQHAGTSANYDVEIIHSAAAHHEGDWLYTYQN--SPNILEDANKSIVTLKWCTPKANSLQ 947
            +T  +VDH     E     +E D   KN+   +  L+ ISKS WTC VE  +EYCRI+YDI    K++  + S+  +  +N +  + QN+Q+++     +GPPN    A+P   SI +G+              H A+ L+  ++E      + I  IT+ + +S  R + + + E  +EH+K              +L++++    G + ++     KE+SP L     ++ A  H +  + +L ++H+ L ST IT IPMKEEQHA TSANYDVE++H   AH   D+L +  +       E + K  +TLKWCTP+ N+++
Sbjct:    9 KTVFVVDHCPYMAESCRQHVEFDMLVKNRTQGIIPLAPISKSLWTCSVESSMEYCRIMYDIFPFKKLVNFIVSDSGAHVLNSWTQEDQNLQELMAALAAVGPPN--PRADPECCSILHGLVAAVETLCKITEYQHEARTLLMENAERVGNRGRII-CITNAKSDSHVRMLEDCVQETIHEHNKLAANSDHLMQIQKCELVLIHTYPVGEDSLVSDRSKKELSPVLTSEVHSVRAGRHLATKLNILVQQHFDLASTTITNIPMKEEQHANTSANYDVELLHHKDAH--VDFLKSGDSHLGGGSREGSFKETITLKWCTPRTNNIE 327
The following BLAST results are available for this feature:
BLAST of TCONS_00044540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
INT131.418e-3331.79Integrator complex subunit 13 OS=Homo sapiens GN=I... [more]
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