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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044458 ID=TCONS_00044458|Name=TCONS_00044458|organism=Clytia hemisphaerica|type=transcript|length=1443bp
AATCTTTTGCGGGGTGACCCTAATATCGTTTCCAAAACAGAAGACGAGGT
TCTCAAAGCTATCAAACATTTAGCCGTCATTCCCGTTGCAATTAGCGTTC
GTAGATCCGATCTACTATCAGTGAACCAATGTGATGGGGAGAGCGTTCGA
TCGTTTTTCGCTAGAATTAAAGGCAAAGCTGCTACCTGCCACTACACTAT
TGACTGCCCTAGTAATGACTGTAATCAATCCGTCGACTTCACTGATATTA
TTGCAAAGGACGTTTTGATTTCTGGTTTGGCTGAGGACGAGGTTAAGCGA
GAGGTTTTGGGATGGCCTGGGCTTGATAACAGCTCTATTGAGGAAACTGT
ATCATTTATCGAGGCTAAGGAAATGGCTAGAGATGCGCTTAATAGACATT
CTTCGAATAGTGCCATCTCTGCTCACCGCTCTGCTAGAAACAAACCTGGA
AAAAGAGACATTCAACGGACGAATTGTCAGTCGTGTAATGTTGAtatgga
aaaaatgttttggagCAAGCGTCAAAAGAAGATGGTCGAACGTAAATTGT
GTGCTACGTGTTGGCGCAAGCATAACCCTAGGAACAATCTAAAAGGGGGT
ACACGACAACGAGAACCGACAGGAGATGATGCTGATGCTATTGCTTTCTC
AATTGACTGTATAACAAACAATACAAAGCTTGAGCATATGTTATTTGATC
CAAGCTCAGGTTGGAAGAGTCACGACTCGATGAAACACCCTACATTGAAA
TTGTCAGTAAATGTCGACCCAAGGGACTATGCTAAATTAGGTCGACCTAC
TCCAAAAGTTCAACCTTCTCAAGTTAATGTGGTAACCGATACGGGCGCTC
AGTCTTGCCTGTGGGGTTTATCTGACTTTATTCGGTGTGGGTTCAACGTA
AATGACCTCATACCAGTAAAACACACCCTCTATGCAGCTAACAAGGAGAA
GATTGACGTTTCCGGTGCGATTCTATTACGTTTGCAAGGGACTGACTCAG
CTGGCCAAACTCGTATGGCAGCTGTGATGACGTATGTTAGCCCTAACACT
CAACGTTTTTATTTGTCTAGAGAAGCACTCGTTCAACTTGGCGTCATAAG
AAAGGACTTCCCTCGTGTCGGTTCAGCTGATGAGGAATGTGCGATTGATG
ATAACAAAGCTCCATGCGGCTGCTCCGTTAGAATCAACCCACCACCCCGC
CCTAAAGAGCTCCCGTTCGCACCTACCCCCGAGAACATCCCTCAGATGAA
AGAATGGTTGGTCGAGACGTACTCATCATCTACcttcaatcaatgtaaac
accAACGCCTTCCATCATTGTCCGGTCCAGCAATCAGTCTTCACGTTAAG
CCAGACGCAACACCTCGTGCTGTCCACACACCTATCCCGGTGTCAATCCA
TTGGCAAGAAGCAGTGAAAGAACAGTTGGATGCTGACGTTGCC Run BLAST on NCBI protein sequence of TCONS_00044458-protein >TCONS_00044458-protein ID=TCONS_00044458-protein|Name=TCONS_00044458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=481bp
NLLRGDPNIVSKTEDEVLKAIKHLAVIPVAISVRRSDLLSVNQCDGESVR
SFFARIKGKAATCHYTIDCPSNDCNQSVDFTDIIAKDVLISGLAEDEVKR
EVLGWPGLDNSSIEETVSFIEAKEMARDALNRHSSNSAISAHRSARNKPG
KRDIQRTNCQSCNVDMEKMFWSKRQKKMVERKLCATCWRKHNPRNNLKGG
TRQREPTGDDADAIAFSIDCITNNTKLEHMLFDPSSGWKSHDSMKHPTLK
LSVNVDPRDYAKLGRPTPKVQPSQVNVVTDTGAQSCLWGLSDFIRCGFNV
NDLIPVKHTLYAANKEKIDVSGAILLRLQGTDSAGQTRMAAVMTYVSPNT
QRFYLSREALVQLGVIRKDFPRVGSADEECAIDDNKAPCGCSVRINPPPR
PKELPFAPTPENIPQMKEWLVETYSSSTFNQCKHQRLPSLSGPAISLHVK
PDATPRAVHTPIPVSIHWQEAVKEQLDADVA Run BLAST on NCBI transcript from alignment at sc0005606:2757..4199 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044458 ID=TCONS_00044458|Name=TCONS_00044458|organism=Clytia hemisphaerica|type=transcript|length=1443bp|location=Sequence derived from alignment at sc0005606:2757..4199 (Clytia hemisphaerica)
GGCAACGTCAGCATCCAACTGTTCTTTCACTGCTTCTTGCCAATGGATTG
ACACCGGGATAGGTGTGTGGACAGCACGAGGTGTTGCGTCTGGCTTAACG
TGAAGACTGATTGCTGGACCGGACAATGATGGAAGGCGTTggtgtttaca
ttgattgaagGTAGATGATGAGTACGTCTCGACCAACCATTCTTTCATCT
GAGGGATGTTCTCGGGGGTAGGTGCGAACGGGAGCTCTTTAGGGCGGGGT
GGTGGGTTGATTCTAACGGAGCAGCCGCATGGAGCTTTGTTATCATCAAT
CGCACATTCCTCATCAGCTGAACCGACACGAGGGAAGTCCTTTCTTATGA
CGCCAAGTTGAACGAGTGCTTCTCTAGACAAATAAAAACGTTGAGTGTTA
GGGCTAACATACGTCATCACAGCTGCCATACGAGTTTGGCCAGCTGAGTC
AGTCCCTTGCAAACGTAATAGAATCGCACCGGAAACGTCAATCTTCTCCT
TGTTAGCTGCATAGAGGGTGTGTTTTACTGGTATGAGGTCATTTACGTTG
AACCCACACCGAATAAAGTCAGATAAACCCCACAGGCAAGACTGAGCGCC
CGTATCGGTTACCACATTAACTTGAGAAGGTTGAACTTTTGGAGTAGGTC
GACCTAATTTAGCATAGTCCCTTGGGTCGACATTTACTGACAATTTCAAT
GTAGGGTGTTTCATCGAGTCGTGACTCTTCCAACCTGAGCTTGGATCAAA
TAACATATGCTCAAGCTTTGTATTGTTTGTTATACAGTCAATTGAGAAAG
CAATAGCATCAGCATCATCTCCTGTCGGTTCTCGTTGTCGTGTACCCCCT
TTTAGATTGTTCCTAGGGTTATGCTTGCGCCAACACGTAGCACACAATTT
ACGTTCGACCATCTTCTTTTGACGCTTGctccaaaacattttttccataT
CAACATTACACGACTGACAATTCGTCCGTTGAATGTCTCTTTTTCCAGGT
TTGTTTCTAGCAGAGCGGTGAGCAGAGATGGCACTATTCGAAGAATGTCT
ATTAAGCGCATCTCTAGCCATTTCCTTAGCCTCGATAAATGATACAGTTT
CCTCAATAGAGCTGTTATCAAGCCCAGGCCATCCCAAAACCTCTCGCTTA
ACCTCGTCCTCAGCCAAACCAGAAATCAAAACGTCCTTTGCAATAATATC
AGTGAAGTCGACGGATTGATTACAGTCATTACTAGGGCAGTCAATAGTGT
AGTGGCAGGTAGCAGCTTTGCCTTTAATTCTAGCGAAAAACGATCGAACG
CTCTCCCCATCACATTGGTTCACTGATAGTAGATCGGATCTACGAACGCT
AATTGCAACGGGAATGACGGCTAAATGTTTGATAGCTTTGAGAACCTCGT
CTTCTGTTTTGGAAACGATATTAGGGTCACCCCGCAAAAGATT Coding sequence (CDS) from alignment at sc0005606:2757..4199 >TCONS_00044458 ID=TCONS_00044458|Name=TCONS_00044458|organism=Clytia hemisphaerica|type=CDS|length=1443bp|location=Sequence derived from alignment at sc0005606:2757..4199 (Clytia hemisphaerica)
GGCAACGTCAGCATCCAACTGTTCTTTCACTGCTTCTTGCCAATGGATTG
ACACCGGGATAGGTGTGTGGACAGCACGAGGTGTTGCGTCTGGCTTAACG
TGAAGACTGATTGCTGGACCGGACAATGATGGAAGGCGTTggtgtttaca
ttgattgaagGTAGATGATGAGTACGTCTCGACCAACCATTCTTTCATCT
GAGGGATGTTCTCGGGGGTAGGTGCGAACGGGAGCTCTTTAGGGCGGGGT
GGTGGGTTGATTCTAACGGAGCAGCCGCATGGAGCTTTGTTATCATCAAT
CGCACATTCCTCATCAGCTGAACCGACACGAGGGAAGTCCTTTCTTATGA
CGCCAAGTTGAACGAGTGCTTCTCTAGACAAATAAAAACGTTGAGTGTTA
GGGCTAACATACGTCATCACAGCTGCCATACGAGTTTGGCCAGCTGAGTC
AGTCCCTTGCAAACGTAATAGAATCGCACCGGAAACGTCAATCTTCTCCT
TGTTAGCTGCATAGAGGGTGTGTTTTACTGGTATGAGGTCATTTACGTTG
AACCCACACCGAATAAAGTCAGATAAACCCCACAGGCAAGACTGAGCGCC
CGTATCGGTTACCACATTAACTTGAGAAGGTTGAACTTTTGGAGTAGGTC
GACCTAATTTAGCATAGTCCCTTGGGTCGACATTTACTGACAATTTCAAT
GTAGGGTGTTTCATCGAGTCGTGACTCTTCCAACCTGAGCTTGGATCAAA
TAACATATGCTCAAGCTTTGTATTGTTTGTTATACAGTCAATTGAGAAAG
CAATAGCATCAGCATCATCTCCTGTCGGTTCTCGTTGTCGTGTACCCCCT
TTTAGATTGTTCCTAGGGTTATGCTTGCGCCAACACGTAGCACACAATTT
ACGTTCGACCATCTTCTTTTGACGCTTGctccaaaacattttttccataT
CAACATTACACGACTGACAATTCGTCCGTTGAATGTCTCTTTTTCCAGGT
TTGTTTCTAGCAGAGCGGTGAGCAGAGATGGCACTATTCGAAGAATGTCT
ATTAAGCGCATCTCTAGCCATTTCCTTAGCCTCGATAAATGATACAGTTT
CCTCAATAGAGCTGTTATCAAGCCCAGGCCATCCCAAAACCTCTCGCTTA
ACCTCGTCCTCAGCCAAACCAGAAATCAAAACGTCCTTTGCAATAATATC
AGTGAAGTCGACGGATTGATTACAGTCATTACTAGGGCAGTCAATAGTGT
AGTGGCAGGTAGCAGCTTTGCCTTTAATTCTAGCGAAAAACGATCGAACG
CTCTCCCCATCACATTGGTTCACTGATAGTAGATCGGATCTACGAACGCT
AATTGCAACGGGAATGACGGCTAAATGTTTGATAGCTTTGAGAACCTCGT
CTTCTGTTTTGGAAACGATATTAGGGTCACCCCGCAAAAGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044458-exon-sc0005606-1491911889:2757..4199 | TCONS_00044458-exon-sc0005606-1491911889:2757..4199 | Clytia hemisphaerica | exon |
| TCONS_00044458-exon-sc0005606-1510915933:2757..4199 | TCONS_00044458-exon-sc0005606-1510915933:2757..4199 | Clytia hemisphaerica | exon |
| TCONS_00044458-exon-sc0005606-1575043694:2757..4199 | TCONS_00044458-exon-sc0005606-1575043694:2757..4199 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005606 | supercontig | sc0005606:2757..4199 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR014727 | TopoI_cat_a/b-sub_euk |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0003917 | DNA topoisomerase type I activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005694 | chromosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006265 | DNA topological change |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006265 |
DNA topological change |
| cellular_component |
GO:0005694 |
chromosome |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0003917 |
DNA topoisomerase type I activity |
Blast
The following BLAST results are available for this feature:
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