TCONS_00044450 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044450
Unique NameTCONS_00044450
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044450 ID=TCONS_00044450|Name=TCONS_00044450|organism=Clytia hemisphaerica|type=transcript|length=384bp
ccTGGCTAAGTTGTAATTTGACCAACAAAACCAAGACAAGAAAACATCCC
TGCATCGCTATCAGAAAGCCCAAGAAAAANTTTGCTATGggtatttaaag
aaattttaccTGGCTAAGTTGTAATTTGACCAACAAAACCAAGACAAGAA
AACATCCCTGCATCGCTATCAGAAAgcccaagaaaaaattgaatttacaa
AGAAGTGgaatcaaaaaagaattttcacatccacaaaatgaaaattctaa
TTTCCATATTGCCCGAGAAAGATACTTCTTTCTCCGGCAAAGTATTCAGT
TCTTTGACAAAAATATAGTAAAAGAGGTATAACTTTATGAAAATATTCGT
Ctccttttaaaattaatttaattttacgagaaaa
Run BLAST on NCBI

transcript from alignment at sc0005596:3581..3964

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044450 ID=TCONS_00044450|Name=TCONS_00044450|organism=Clytia hemisphaerica|type=transcript|length=384bp|location=Sequence derived from alignment at sc0005596:3581..3964 (Clytia hemisphaerica)
ttttctcgtaaaattaaattaattttaaaaggaGACGAATATTTTCATAA
AGTTATACCTCTTTTACTATATTTTTGTCAAAGAACTGAATACTTTGCCG
GAGAAAGAAGTATCTTTCTCGGGCAATATGGAAAttagaattttcatttt
gtggatgtgaaaattcttttttgattcCACTTCTttgtaaattcaatttt
ttcttgggcTTTCTGATAGCGATGCAGGGATGTTTTCTTGTCTTGGTTTT
GTTGGTCAAATTACAACTTAGCCAggtaaaatttctttaaataccCATAG
CAAANTTTTTCTTGGGCTTTCTGATAGCGATGCAGGGATGTTTTCTTGTC
TTGGTTTTGTTGGTCAAATTACAACTTAGCCAgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028082XLOC_028082Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044450-exon-sc0005596-1491911889:3581..3964TCONS_00044450-exon-sc0005596-1491911889:3581..3964Clytia hemisphaericaexon
TCONS_00044450-exon-sc0005596-1510915933:3581..3964TCONS_00044450-exon-sc0005596-1510915933:3581..3964Clytia hemisphaericaexon
TCONS_00044450-exon-sc0005596-1575043694:3581..3964TCONS_00044450-exon-sc0005596-1575043694:3581..3964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005596supercontigsc0005596:3581..3964 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.197958	0.211609	0	0.255999	2.81394	4.91735	1.00783	0.729408	0.697189	1.18486	23.243	12.2743	17.2611	11.932	5.85764	8.69985	0.652987	0.589321	2.43551	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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