TCONS_00044446 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044446
Unique NameTCONS_00044446
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2082

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044446 ID=TCONS_00044446|Name=TCONS_00044446|organism=Clytia hemisphaerica|type=transcript|length=2082bp
CTTTGTTTCTCTCCAGACTAAAAAACTAAcaaattaacaaaagaaaatga
gcAACAGACATTGTGCGTGTGACAAACAAACTGAACAATTGGCTTCATTG
AACAGTGAAGGTACTCGACATTACAACAACACTCAATGGATGAAAGCTGT
CAACAAATTCACCGATGCTTTAGAAGTTCATTCATGTGATATGAAGACTC
GTTCCTCCGTGTTGAGGAACCGCTCTTCTGCGTACACCAAGTTGAAGAAG
TTTGAACAAGCAAAACATGATGCTAAAGAAAGTATTCGCTTGGACCCTAA
GCATCCTAAAGCATTCATCAAACTGGCAGAAGCTTTTGAAGGTGAGGGAG
ATTACGAACAAGCTTGTGAGACATATGTTCATGGGATGACGCAAGGTGAC
GAGTTAATGAACGTCTTGAGCAAGAAGTTGGAAGAACTCAGAATAAGGCG
TAATATGCCTCCCACTGAAGCTGAATCACAGCTCGGCTTGATGGGTCTTG
TGAAAGCGAAACATTGCTTCGTGTGTCGATCCAAAGATAATCTTTCGGTG
TGTGCTCGATGTCGTGTTGTGTATTATTGTTGTCGTGAACATCAAGCAGA
TGATTggaaaaaacacaaaatgatGTGTAAGAAACTTGGAGAAGCGAGAA
AAGATGAGAAACTAATGGATCGTTTGGAAGTTGAAGACTCTCTTCCTTAT
TTGAGGGTTAAACGTGGTGCTACTGTGCCCATCATTAGACAACTACATTC
GCTGGATGATATATGGGGATATTTGGAATGCGTGGCTTCAAAAGAGGAGA
TCTTCAAAAAGAGAATGGCTAACTGTTTGAGTTGGCCCATGACNTGGATG
ATATATGGGGATATTTGGAATGCGTGGCTTCAAAAGAGGAGATCTTCAAA
AAGAGAATGGCTAACTGTTTGAGTTGGCCCATGACTTTAGCTTTTGGATT
GAAACGATTCGATATGTGCGAGATGAGGAATTTGAGCATCCACGTTGTTG
GAGCAGACGAACAGTACGTGCAGCAGGATGAAGGTTTCTTTACTTCGTTC
CTCAAATTCATCCCTCTTCCACCTGCTTGTACTATTGTCTTGGTTGGCCC
TGACATGCATCATTTACCACCGCGTAAGAAGATAAAATGTGTGAACGGGA
GTGTCGTCACTATTGATTTTGTCAAATCGTGTTGGCATGAGTATATGAGA
AGAACGCGTTTTGTTCCTTTACCACACTTCATAATGGGATGTCATCCAGG
CTTTCATCATTATTTCAGTTGGCAACTCAGTCTAATGATGATGCTTGAAA
CACCTATCCCGTGCGTGTTTACGTCTTGGGATAAACGTGATTACGATATC
ACGTTGGAGCACTTGAACACGGTAAAAGCGAACATCGTGTTTAAAGGTGA
ATCACCGATGGCATCTCCTCTACATCAGCATCTGTTGCGCACGTGGAATG
AATATGGCTTCAAAACAATGAACTCTTACTGGGTGGGCGTGAAGGGCGGA
CNGCATCTCCTCTACATCAGCATCTGTTGCGCACGTGGAATGAATATGGC
TTCAAAACAATGAACTCTTACTGGGTGGGCGTGAAGGGCGGACATTAGAT
TGAAAGTAATATCAAACTATGAACCCTGCAAAAATTGTTGACTCCTTTTT
AGCTTGCAGATCTAAATGGAGCATATTGTCCatacgttttttaaagaaat
atttagCTATTGTTTAGATTTTTACGTTTATATTGACTCCTACTATCATG
CTTACAACCGGACATATTTTACTGTATATATTTTGGACATAATATTGAGA
CTCAAAACAAGATTTTGTTGTCCAAGTCATGGAATATTTGTGTTACCTGG
ACGGACCTTTTTTGAGCAAAAGAAGACATTTGATATAGAGAATTTACGAC
TTTAGAGTGTATTTTTATATTGACTATCATGGataactttttaacttttt
gtacatattttaacGTCTTTGTAGGTACTTTTAAACCACAGACAGCTATA
GTAGAGCCCATTTATTTAGTTTCAATTTATGaagtaaaaagaaaagtttt
taagtaCTGTTTATCTGAACTCAACGTCCCGT
Run BLAST on NCBI

protein sequence of TCONS_00044446-protein

>TCONS_00044446-protein ID=TCONS_00044446-protein|Name=TCONS_00044446-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MSNRHCACDKQTEQLASLNSEGTRHYNNTQWMKAVNKFTDALEVHSCDMK
TRSSVLRNRSSAYTKLKKFEQAKHDAKESIRLDPKHPKAFIKLAEAFEGE
GDYEQACETYVHGMTQGDELMNVLSKKLEELRIRRNMPPTEAESQLGLMG
LVKAKHCFVCRSKDNLSVCARCRVVYYCCREHQADDWKKHKMMCKKLGEA
RKDEKLMDRLEVEDSLPYLRVKRGATVPIIRQLHSLDDIWGYLECVASKE
EIFKKRMANCLSWPMXWMIYGDIWNAWLQKRRSSKREWLTV
Run BLAST on NCBI

transcript from alignment at sc0005592:1617..3698

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044446 ID=TCONS_00044446|Name=TCONS_00044446|organism=Clytia hemisphaerica|type=transcript|length=2082bp|location=Sequence derived from alignment at sc0005592:1617..3698 (Clytia hemisphaerica)
ACGGGACGTTGAGTTCAGATAAACAGtacttaaaaacttttctttttact
tCATAAATTGAAACTAAATAAATGGGCTCTACTATAGCTGTCTGTGGTTT
AAAAGTACCTACAAAGACgttaaaatatgtacaaaaagttaaaaagttat
CCATGATAGTCAATATAAAAATACACTCTAAAGTCGTAAATTCTCTATAT
CAAATGTCTTCTTTTGCTCAAAAAAGGTCCGTCCAGGTAACACAAATATT
CCATGACTTGGACAACAAAATCTTGTTTTGAGTCTCAATATTATGTCCAA
AATATATACAGTAAAATATGTCCGGTTGTAAGCATGATAGTAGGAGTCAA
TATAAACGTAAAAATCTAAACAATAGctaaatatttctttaaaaaacgta
tGGACAATATGCTCCATTTAGATCTGCAAGCTAAAAAGGAGTCAACAATT
TTTGCAGGGTTCATAGTTTGATATTACTTTCAATCTAATGTCCGCCCTTC
ACGCCCACCCAGTAAGAGTTCATTGTTTTGAAGCCATATTCATTCCACGT
GCGCAACAGATGCTGATGTAGAGGAGATGCNGTCCGCCCTTCACGCCCAC
CCAGTAAGAGTTCATTGTTTTGAAGCCATATTCATTCCACGTGCGCAACA
GATGCTGATGTAGAGGAGATGCCATCGGTGATTCACCTTTAAACACGATG
TTCGCTTTTACCGTGTTCAAGTGCTCCAACGTGATATCGTAATCACGTTT
ATCCCAAGACGTAAACACGCACGGGATAGGTGTTTCAAGCATCATCATTA
GACTGAGTTGCCAACTGAAATAATGATGAAAGCCTGGATGACATCCCATT
ATGAAGTGTGGTAAAGGAACAAAACGCGTTCTTCTCATATACTCATGCCA
ACACGATTTGACAAAATCAATAGTGACGACACTCCCGTTCACACATTTTA
TCTTCTTACGCGGTGGTAAATGATGCATGTCAGGGCCAACCAAGACAATA
GTACAAGCAGGTGGAAGAGGGATGAATTTGAGGAACGAAGTAAAGAAACC
TTCATCCTGCTGCACGTACTGTTCGTCTGCTCCAACAACGTGGATGCTCA
AATTCCTCATCTCGCACATATCGAATCGTTTCAATCCAAAAGCTAAAGTC
ATGGGCCAACTCAAACAGTTAGCCATTCTCTTTTTGAAGATCTCCTCTTT
TGAAGCCACGCATTCCAAATATCCCCATATATCATCCANGTCATGGGCCA
ACTCAAACAGTTAGCCATTCTCTTTTTGAAGATCTCCTCTTTTGAAGCCA
CGCATTCCAAATATCCCCATATATCATCCAGCGAATGTAGTTGTCTAATG
ATGGGCACAGTAGCACCACGTTTAACCCTCAAATAAGGAAGAGAGTCTTC
AACTTCCAAACGATCCATTAGTTTCTCATCTTTTCTCGCTTCTCCAAGTT
TCTTACACatcattttgtgttttttccAATCATCTGCTTGATGTTCACGA
CAACAATAATACACAACACGACATCGAGCACACACCGAAAGATTATCTTT
GGATCGACACACGAAGCAATGTTTCGCTTTCACAAGACCCATCAAGCCGA
GCTGTGATTCAGCTTCAGTGGGAGGCATATTACGCCTTATTCTGAGTTCT
TCCAACTTCTTGCTCAAGACGTTCATTAACTCGTCACCTTGCGTCATCCC
ATGAACATATGTCTCACAAGCTTGTTCGTAATCTCCCTCACCTTCAAAAG
CTTCTGCCAGTTTGATGAATGCTTTAGGATGCTTAGGGTCCAAGCGAATA
CTTTCTTTAGCATCATGTTTTGCTTGTTCAAACTTCTTCAACTTGGTGTA
CGCAGAAGAGCGGTTCCTCAACACGGAGGAACGAGTCTTCATATCACATG
AATGAACTTCTAAAGCATCGGTGAATTTGTTGACAGCTTTCATCCATTGA
GTGTTGTTGTAATGTCGAGTACCTTCACTGTTCAATGAAGCCAATTGTTC
AGTTTGTTTGTCACACGCACAATGTCTGTTgctcattttcttttgttaat
ttgTTAGTTTTTTAGTCTGGAGAGAAACAAAG

Coding sequence (CDS) from alignment at sc0005592:1617..3698

>TCONS_00044446 ID=TCONS_00044446|Name=TCONS_00044446|organism=Clytia hemisphaerica|type=CDS|length=876bp|location=Sequence derived from alignment at sc0005592:1617..3698 (Clytia hemisphaerica)
TCAAACAGTTAGCCATTCTCTTTTTGAAGATCTCCTCTTTTGAAGCCACG
CATTCCAAATATCCCCATATATCATCCANGTCATGGGCCAACTCAAACAG
TTAGCCATTCTCTTTTTGAAGATCTCCTCTTTTGAAGCCACGCATTCCAA
ATATCCCCATATATCATCCAGCGAATGTAGTTGTCTAATGATGGGCACAG
TAGCACCACGTTTAACCCTCAAATAAGGAAGAGAGTCTTCAACTTCCAAA
CGATCCATTAGTTTCTCATCTTTTCTCGCTTCTCCAAGTTTCTTACACat
cattttgtgttttttccAATCATCTGCTTGATGTTCACGACAACAATAAT
ACACAACACGACATCGAGCACACACCGAAAGATTATCTTTGGATCGACAC
ACGAAGCAATGTTTCGCTTTCACAAGACCCATCAAGCCGAGCTGTGATTC
AGCTTCAGTGGGAGGCATATTACGCCTTATTCTGAGTTCTTCCAACTTCT
TGCTCAAGACGTTCATTAACTCGTCACCTTGCGTCATCCCATGAACATAT
GTCTCACAAGCTTGTTCGTAATCTCCCTCACCTTCAAAAGCTTCTGCCAG
TTTGATGAATGCTTTAGGATGCTTAGGGTCCAAGCGAATACTTTCTTTAG
CATCATGTTTTGCTTGTTCAAACTTCTTCAACTTGGTGTACGCAGAAGAG
CGGTTCCTCAACACGGAGGAACGAGTCTTCATATCACATGAATGAACTTC
TAAAGCATCGGTGAATTTGTTGACAGCTTTCATCCATTGAGTGTTGTTGT
AATGTCGAGTACCTTCACTGTTCAATGAAGCCAATTGTTCAGTTTGTTTG
TCACACGCACAATGTCTGTTgctcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028078XLOC_028078Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044446-proteinTCONS_00044446-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044446-exon-sc0005592-1491911889:1617..3698TCONS_00044446-exon-sc0005592-1491911889:1617..3698Clytia hemisphaericaexon
TCONS_00044446-exon-sc0005592-1510915933:1617..3698TCONS_00044446-exon-sc0005592-1510915933:1617..3698Clytia hemisphaericaexon
TCONS_00044446-exon-sc0005592-1575043694:1617..3698TCONS_00044446-exon-sc0005592-1575043694:1617..3698Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005592supercontigsc0005592:1617..3698 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.89868	7.40691	2.68084	1.84644	10.3964	8.59887	7.3301	8.25306	6.32086	4.54739	4.31785	4.18819	1.96521	2.17172	3.9581	5.58658	8.01976	8.00138	0.302031	0.337124	4.70667	4.15378	17.5265	13.4463	3.90467	4.19268	1.81809	1.57997	9.54479	11.1383
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR002893Znf_MYND
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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