TCONS_00044446-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00044446-protein
Unique NameTCONS_00044446-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00044446-protein ID=TCONS_00044446-protein|Name=TCONS_00044446-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MSNRHCACDKQTEQLASLNSEGTRHYNNTQWMKAVNKFTDALEVHSCDMK
TRSSVLRNRSSAYTKLKKFEQAKHDAKESIRLDPKHPKAFIKLAEAFEGE
GDYEQACETYVHGMTQGDELMNVLSKKLEELRIRRNMPPTEAESQLGLMG
LVKAKHCFVCRSKDNLSVCARCRVVYYCCREHQADDWKKHKMMCKKLGEA
RKDEKLMDRLEVEDSLPYLRVKRGATVPIIRQLHSLDDIWGYLECVASKE
EIFKKRMANCLSWPMXWMIYGDIWNAWLQKRRSSKREWLTV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_028078XLOC_028078Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00044446TCONS_00044446Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR002893Znf_MYND
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 53..86
e-value: 0.031
score: 23.4
coord: 87..120
e-value: 31.0
score: 10.7
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 58..86
e-value: 0.0025
score: 17.8
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 15..48
score: 5.428
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 87..120
score: 5.959
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 53..86
score: 9.145
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 66..213
e-value: 5.5E-11
score: 42.0
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 16..122
IPR002893Zinc finger, MYND-typePFAMPF01753zf-MYNDcoord: 157..194
e-value: 5.9E-9
score: 35.8
IPR002893Zinc finger, MYND-typePROSITEPS50865ZF_MYND_2coord: 157..194
score: 10.834
NoneNo IPR availableGENE3D1.10.150.160coord: 6..65
e-value: 8.7E-9
score: 34.8
NoneNo IPR availableSUPERFAMILY144232HIT/MYND zinc finger-likecoord: 153..197
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 15..120
score: 15.054

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044446-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top