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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044396 ID=TCONS_00044396|Name=TCONS_00044396|organism=Clytia hemisphaerica|type=transcript|length=1077bp
agaGAACACTAATGAATTCAGAGTTcagaaactgaagaagaaataaatat
atttcaatGAAAGATGCTTTGAAAGCAACGAAGATTAATCGAAATATGGT
ATcgattttattgtatttttgatCGAAATTAAACTAGAATTACACTGAGA
CattcaaaagtgcaaatacattaGAAGACCAGTACACACGACAAATAAAA
TTTCATGAACTTGAATGTATGATTTTTTAGATCAAAATTAAACTAGAATT
ACACTGAGACATTCAAAGGTGCAAATACATTAGAAGACCTGTTCACacag
caaataaaatttcatgAACACTTGTAGAtaataaacaaaatttaacgTAT
ACACAACATTACGCATTATATCGTTATCTTACACAATGAAATTAAGCCGT
TACCTGACTGCAATATGTATCCTTTCAATCACAACACTAGGCTATATCTA
TTTCGTGCACTACAACGAAACATCCACTCAtttgaaatatatcaaatatA
GTCTGTTTAATAAATTATGTATTGATCAAGGCCTCCAGACGGCCTGGTGT
CGTCAGGAAGAGGTCCTTGCAGATAAGATTGAGAGCAACGATAATAAACT
TTTAGACAAAATAGTGcgaaagaaattgaaagaaaaacttAAGAAGGAGA
TTAACCAGTACAAACTTAATAAACAAGTCAAActcaataacaaaagaaat
aaacaaGAACAAGATACATCGTTGAAGCGCATAGACCATGAAATCAAGAG
TACAGCTAGACCAACAAAGACTACTAAAATACCATCTTCAACCTGGATTC
CAACAACAGGCTACCGGCGCAAGCCACAGAAATGCAATATACCCATAGTG
GATCCTTTTCACCGCGAAGTTCGACCATACATTACTTACAAATGGACGCA
AAAATGTACTCTAGCCTGGGAGAAATCTCGAGTGGAAAAAGGGTTCTTGT
ACGTAGACCTTGCAGATGTGTCGGCGGTAAATATGAGTTACATAAAACGT
ATAAGTGATGAGGATAATGAATTGGACACACGGAATATTTATCATGAGTC
GACCTCGACAAAGTCTAAGAAAGGTAA Run BLAST on NCBI protein sequence of TCONS_00044396-protein >TCONS_00044396-protein ID=TCONS_00044396-protein|Name=TCONS_00044396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MKLSRYLTAICILSITTLGYIYFVHYNETSTHLKYIKYSLFNKLCIDQGL
QTAWCRQEEVLADKIESNDNKLLDKIVRKKLKEKLKKEINQYKLNKQVKL
NNKRNKQEQDTSLKRIDHEIKSTARPTKTTKIPSSTWIPTTGYRRKPQKC
NIPIVDPFHREVRPYITYKWTQKCTLAWEKSRVEKGFLYVDLADVSAVNM
SYIKRISDEDNELDTRNIYHESTSTKSKKG Run BLAST on NCBI transcript from alignment at sc0005510:3148..4224 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044396 ID=TCONS_00044396|Name=TCONS_00044396|organism=Clytia hemisphaerica|type=transcript|length=1077bp|location=Sequence derived from alignment at sc0005510:3148..4224 (Clytia hemisphaerica)
TTACCTTTCTTAGACTTTGTCGAGGTCGACTCATGATAAATATTCCGTGT
GTCCAATTCATTATCCTCATCACTTATACGTTTTATGTAACTCATATTTA
CCGCCGACACATCTGCAAGGTCTACGTACAAGAACCCTTTTTCCACTCGA
GATTTCTCCCAGGCTAGAGTACATTTTTGCGTCCATTTGTAAGTAATGTA
TGGTCGAACTTCGCGGTGAAAAGGATCCACTATGGGTATATTGCATTTCT
GTGGCTTGCGCCGGTAGCCTGTTGTTGGAATCCAGGTTGAAGATGGTATT
TTAGTAGTCTTTGTTGGTCTAGCTGTACTCTTGATTTCATGGTCTATGCG
CTTCAACGATGTATCTTGTTCttgtttatttcttttgttattgagTTTGA
CTTGTTTATTAAGTTTGTACTGGTTAATCTCCTTCTTaagtttttctttc
aatttctttcgCACTATTTTGTCTAAAAGTTTATTATCGTTGCTCTCAAT
CTTATCTGCAAGGACCTCTTCCTGACGACACCAGGCCGTCTGGAGGCCTT
GATCAATACATAATTTATTAAACAGACTatatttgatatatttcaaaTGA
GTGGATGTTTCGTTGTAGTGCACGAAATAGATATAGCCTAGTGTTGTGAT
TGAAAGGATACATATTGCAGTCAGGTAACGGCTTAATTTCATTGTGTAAG
ATAACGATATAATGCGTAATGTTGTGTATAcgttaaattttgtttattaT
CTACAAGTGTTcatgaaattttatttgctgtGTGAACAGGTCTTCTAATG
TATTTGCACCTTTGAATGTCTCAGTGTAATTCTAGTTTAATTTTGATCTA
AAAAATCATACATTCAAGTTCATGAAATTTTATTTGTCGTGTGTACTGGT
CTTCtaatgtatttgcacttttgaatGTCTCAGTGTAATTCTAGTTTAAT
TTCGatcaaaaatacaataaaatcgATACCATATTTCGATTAATCTTCGT
TGCTTTCAAAGCATCTTTCattgaaatatatttatttcttcttcagtttc
tgAACTCTGAATTCATTAGTGTTCtct Coding sequence (CDS) from alignment at sc0005510:3148..4224 >TCONS_00044396 ID=TCONS_00044396|Name=TCONS_00044396|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at sc0005510:3148..4224 (Clytia hemisphaerica)
ACCTTTCTTAGACTTTGTCGAGGTCGACTCATGATAAATATTCCGTGTGT
CCAATTCATTATCCTCATCACTTATACGTTTTATGTAACTCATATTTACC
GCCGACACATCTGCAAGGTCTACGTACAAGAACCCTTTTTCCACTCGAGA
TTTCTCCCAGGCTAGAGTACATTTTTGCGTCCATTTGTAAGTAATGTATG
GTCGAACTTCGCGGTGAAAAGGATCCACTATGGGTATATTGCATTTCTGT
GGCTTGCGCCGGTAGCCTGTTGTTGGAATCCAGGTTGAAGATGGTATTTT
AGTAGTCTTTGTTGGTCTAGCTGTACTCTTGATTTCATGGTCTATGCGCT
TCAACGATGTATCTTGTTCttgtttatttcttttgttattgagTTTGACT
TGTTTATTAAGTTTGTACTGGTTAATCTCCTTCTTaagtttttctttcaa
tttctttcgCACTATTTTGTCTAAAAGTTTATTATCGTTGCTCTCAATCT
TATCTGCAAGGACCTCTTCCTGACGACACCAGGCCGTCTGGAGGCCTTGA
TCAATACATAATTTATTAAACAGACTatatttgatatatttcaaaTGAGT
GGATGTTTCGTTGTAGTGCACGAAATAGATATAGCCTAGTGTTGTGATTG
AAAGGATACATATTGCAGTCAGGTAACGGCTTAATTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044396-exon-sc0005510-1491911889:3148..4224 | TCONS_00044396-exon-sc0005510-1491911889:3148..4224 | Clytia hemisphaerica | exon |
| TCONS_00044396-exon-sc0005510-1510915933:3148..4224 | TCONS_00044396-exon-sc0005510-1510915933:3148..4224 | Clytia hemisphaerica | exon |
| TCONS_00044396-exon-sc0005510-1575043694:3148..4224 | TCONS_00044396-exon-sc0005510-1575043694:3148..4224 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005510 | supercontig | sc0005510:3148..4224 . |
Blast
The following BLAST results are available for this feature:
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