TCONS_00044388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044388
Unique NameTCONS_00044388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length413

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044388 ID=TCONS_00044388|Name=TCONS_00044388|organism=Clytia hemisphaerica|type=transcript|length=413bp
ATATACAATTAACAAACTTGTGAAATGGGTTTTTACAACCTATTTTTCTT
AAGCTTgtgaaaataaatctttttaactAAAAAATGCCCAGGATTTGAGA
AATCCCAAATCAGACTAAAGAAAATGTCTTTGAGGTCGGAAATTGATATT
CCCAAACTTGGTATCAGAACAGTTAGTTCCTATGCTATTTTACCTTGTGA
TTGTCAATATCCCAAGTTATGACGTATACAATTAACAAACTTGTTAAATG
GAACTTTACAACCTATCTTTTTAAATATTGTGAAAATTAGTTCTATCAtt
gtgaaaatcaaattcacgatgaccttgtgaaaagaaaacttcaatgTGAA
ATAAGAAAACCCAATGTTCACAATATTCCAAACTTTATTTCAcaaactaa
attttgaaaatcc
Run BLAST on NCBI

transcript from alignment at sc0005491:3835..4247

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044388 ID=TCONS_00044388|Name=TCONS_00044388|organism=Clytia hemisphaerica|type=transcript|length=413bp|location=Sequence derived from alignment at sc0005491:3835..4247 (Clytia hemisphaerica)
ggattttcaaaatttagtttgTGAAATAAAGTTTGGAATATTGTGAACAT
TGGGTTTTCTTATTTCAcattgaagttttcttttcacaaggtcatcgtga
atttgattttcacaaTGATAGAACTAATTTTCACAATATTTAAAAAGATA
GGTTGTAAAGTTCCATTTAACAAGTTTGTTAATTGTATACGTCATAACTT
GGGATATTGACAATCACAAGGTAAAATAGCATAGGAACTAACTGTTCTGA
TACCAAGTTTGGGAATATCAATTTCCGACCTCAAAGACATTTTCTTTAGT
CTGATTTGGGATTTCTCAAATCCTGGGCATTTTTTagttaaaaagattta
ttttcacAAGCTTAAGAAAAATAGGTTGTAAAAACCCATTTCACAAGTTT
GTTAATTGTATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028020XLOC_028020Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044388-exon-sc0005491-1491911889:3835..4247TCONS_00044388-exon-sc0005491-1491911889:3835..4247Clytia hemisphaericaexon
TCONS_00044388-exon-sc0005491-1510915933:3835..4247TCONS_00044388-exon-sc0005491-1510915933:3835..4247Clytia hemisphaericaexon
TCONS_00044388-exon-sc0005491-1575043694:3835..4247TCONS_00044388-exon-sc0005491-1575043694:3835..4247Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005491supercontigsc0005491:3835..4247 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.173911	0	0	0.192646	7.70112	6.83479	7.90421	12.6072	4.18698	0.482579	1.6359	1.33198	0.433581	0	0.213981	0.177362	0	0.133814	0	0.193454	0.588566	0.695022	0	0.61564	0.567328	0.792787	0.869246	0.421806	0	0.62682
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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