TCONS_00044379 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044379
Unique NameTCONS_00044379
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044379 ID=TCONS_00044379|Name=TCONS_00044379|organism=Clytia hemisphaerica|type=transcript|length=289bp
TGTGTATAAGGTAAGACTTTTATGTAAATGTAAGATATAGCCAGTACAGA
AATACGTACAGTCTCCCCTTCTCTGTTTGATGTCTGAACTAGTCTTCCAC
CCGTTAATAGTGTGGTGTCGACCTAGACGTGGGCCGGCATCACATTATTA
CACTTTGATTCGCACGAACCAGGGTCACAAAGACTTGGTTTAAGAATTAA
GATAATTTGAAATgtaatattttctattttggaTATTAATAATTATGTGA
ACAACAATAAATTGATGGTAAAAATTTGGCGAATTAAGT
Run BLAST on NCBI

transcript from alignment at sc0005485:12..300

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044379 ID=TCONS_00044379|Name=TCONS_00044379|organism=Clytia hemisphaerica|type=transcript|length=289bp|location=Sequence derived from alignment at sc0005485:12..300 (Clytia hemisphaerica)
ACTTAATTCGCCAAATTTTTACCATCAATTTATTGTTGTTCACATAATTA
TTAATAtccaaaatagaaaatattacATTTCAAATTATCTTAATTCTTAA
ACCAAGTCTTTGTGACCCTGGTTCGTGCGAATCAAAGTGTAATAATGTGA
TGCCGGCCCACGTCTAGGTCGACACCACACTATTAACGGGTGGAAGACTA
GTTCAGACATCAAACAGAGAAGGGGAGACTGTACGTATTTCTGTACTGGC
TATATCTTACATTTACATAAAAGTCTTACCTTATACACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028011XLOC_028011Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044379-exon-sc0005485-1491911889:12..300TCONS_00044379-exon-sc0005485-1491911889:12..300Clytia hemisphaericaexon
TCONS_00044379-exon-sc0005485-1510915933:12..300TCONS_00044379-exon-sc0005485-1510915933:12..300Clytia hemisphaericaexon
TCONS_00044379-exon-sc0005485-1575043694:12..300TCONS_00044379-exon-sc0005485-1575043694:12..300Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005485supercontigsc0005485:12..300 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.32448	0.430524	0.49988	1.46716	2.38151	0.94095	0.567608	1.59416	1.48815	1.38248	0.894581	0.882094	0.587245	3.96409	0	0.538066	0.331427	0.339701	0.469316	0.982211	1.28058	3.12311	0.506206	0	0.474011	0	0	0	1.47007	1.49776
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044379 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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