TCONS_00044365 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044365
Unique NameTCONS_00044365
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044365 ID=TCONS_00044365|Name=TCONS_00044365|organism=Clytia hemisphaerica|type=transcript|length=326bp
GACTCACCTTAAACTGTCCATATAAGGATAACAAAGAGTAACAAATAACA
ATCAACAAAGGTCCCCAGAAATCTGGGCTTTCCTTTAATATCGTTCGTTG
GAATCCTAGTTGAGGTAATGGGAACAAAACACATCTGACTTTGTAGTATA
TATCTTTCAAATCAATATCCAGCTCCTccctaaaaacataaaaaaggtTT
TCATATAAGTATCTGCAATCTActaccgtattacttcaaatCAACACCCT
GGGTGTTTATCAAATCTTTGGgtttttaggaggggcgtttgaAAGAAGAG
GAGGTTATTGttatttataaaattta
Run BLAST on NCBI

transcript from alignment at sc0005462:3724..4049

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044365 ID=TCONS_00044365|Name=TCONS_00044365|organism=Clytia hemisphaerica|type=transcript|length=326bp|location=Sequence derived from alignment at sc0005462:3724..4049 (Clytia hemisphaerica)
taaattttataaataaCAATAACCTCCTCTTCTTtcaaacgcccctccta
aaaacCCAAAGATTTGATAAACACCCAGGGTGTTGatttgaagtaatacg
gtagTAGATTGCAGATACTTATATGAAAaccttttttatgtttttagggA
GGAGCTGGATATTGATTTGAAAGATATATACTACAAAGTCAGATGTGTTT
TGTTCCCATTACCTCAACTAGGATTCCAACGAACGATATTAAAGGAAAGC
CCAGATTTCTGGGGACCTTTGTTGATTGTTATTTGTTACTCTTTGTTATC
CTTATATGGACAGTTTAAGGTGAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027997XLOC_027997Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044365-exon-sc0005462-1491911889:3724..4049TCONS_00044365-exon-sc0005462-1491911889:3724..4049Clytia hemisphaericaexon
TCONS_00044365-exon-sc0005462-1510915933:3724..4049TCONS_00044365-exon-sc0005462-1510915933:3724..4049Clytia hemisphaericaexon
TCONS_00044365-exon-sc0005462-1575043694:3724..4049TCONS_00044365-exon-sc0005462-1575043694:3724..4049Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005462supercontigsc0005462:3724..4049 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.8111	40.5081	23.3452	26.1984	49.8856	43.2977	71.7282	72.2604	42.6703	43.3594	39.6281	40.7914	30.8535	38.5338	29.0974	27.9001	37.5573	38.0284	25.1411	24.2846	26.0915	36.4636	33.7227	35.0838	55.0172	46.7772	29.5192	23.9606	30.6253	24.0018
Blast
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BLAST of TCONS_00044365 vs. Swiss-Prot (Human)
Match: YIPF4 (Protein YIPF4 OS=Homo sapiens GN=YIPF4 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.447e-25
Identity = 39/58 (67.24%), Postives = 52/58 (89.66%), Query Frame = -2 
Query:    5 EELDIDLKDIYYKVRCVLFPLPQLGFQRTILKESPDFWGPLLIVICYSLLSLYGQFKV 178
            EELDIDLKDIYYK+RCVL P+P LGF R +++++PDFWGPL +V+ +S++SLYGQF+V
Sbjct:   79 EELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVVLFFSMISLYGQFRV 136
The following BLAST results are available for this feature:
BLAST of TCONS_00044365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
YIPF47.447e-2567.24Protein YIPF4 OS=Homo sapiens GN=YIPF4 PE=1 SV=1[more]
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