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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044363 ID=TCONS_00044363|Name=TCONS_00044363|organism=Clytia hemisphaerica|type=transcript|length=2590bp
ACTATGAACATTATAATGAAAGAATGGAAATTTAAGGCAGCAATAAATTC
tttaaaacatgaaaagtatAAATCCACAGAGCATAAAGTGATTAAATCTT
GAAAGAGACAAACAGTGTTTATTAAAAGAGCAAAAAAATACTGACActgt
aaacaatcattcagaaataaattaaaactgaagtaagaacaaatttgatt
tcattattcagttttcatttcatcatagaTTGCGATTCATGTGGCGGAGT
TGGGGATGGGGAAGGGGAAGGGGGGAGCAATAAAATTACAAAGTCAATTC
TATTTATTTACAAAGTCCTATATATACATTTTACATTTAAACAAAACATA
CATTAAAATATACAGTTGAATTACCGAATTTTTAATTATCAATATGAAAA
TTCTAAGAGTATGGAACNAGATGAATTACCGAATTTTTAATTATCAATTA
TGAAAATTCTAAGAGTATGGAATGAGGTTAACAAAAATAGCAAAGTGATC
ACTGAAAGGAGATGGCATCCACCCTGCTGCATCGGAGCAATTATTTTGGA
AGATGAgatctaaaatatttccatcGATATGAGTGGGATATTGACAACGC
TGGTGAAAGATATGCGGTGGTAATAATTCATTCAGATCATTTCTGTTATC
AGGCAAGTTGAAATCACCAAGAATTACTGTCGAGTATGTGGCAACGTCAA
TTTGCTGTTCAATTTGATCGAGTTCGATTTGCAGCGATTgtataaacaaa
ggaattgaaCTTGCCGGAGGTCTGTAAATTAGAACGAGTAAAATATATTC
ACCATTGACCATGACCAAAGACGGAAGTAATTCTATGTTACTAACTGTAT
TTAATAACTGAATTATTTGAACATGATTTGTATCATAAGTTATTGCTNTA
AATTAAAACGAGTAAAATATATTCACCATTGACCATGACCAAAGACGGAA
GTAATTCTATGTTACTAACTGTATTTAATAACTGAATTATTTGAACATGA
TTCGTATCATAAGTTATTGCTAGTCCATGTTCAGTTTGTTTGTGTAATGT
TTTCCAAGTAGATAAGTTTGGATTATCCTCTACCCTTTTGGCAGTATTTC
TACCAGTTTCTGTAAAACATAGCAAGCAGCATCTAGAggtgtaaattttt
tgagataGGAAATGCTCAATATGCATATTCCATGATCTAATATTGAAAAG
ACACAAGTTTGGACCGTTCATTCTTTCCAACGGATGAGTTAATAATAAAG
CCTTATTCGATCTCATTTCCTCCATTGCTTTTAGGGCCTTATTATTTACA
ACAATATGTTTTTCAGGCTTGAAATTCAATAAATGTATATTGTTACTAGA
TGTGGCACGAGAAAGTAGTGTGTATAGAAGCCCTGGTCCAACTGGTGTTA
ACCCTTTCCCACTTCTAGTTGATTGATCTAAATTCCCACTAGCGTATTCC
AATGTACTACCTTGTGCTTTGTGAATCGTAGTAGCAAATGCAACAATCAA
TGGGAACTGTTTTCTTGTAATTTCAATGTCattgaatttaaaagtttttg
tttctgGGTAAATAGGAACGCATGATTTGTATTCATATTTTAATCTCGAG
TCTTTCAGTTTGTTACCAGATGAGGGATTGTCAAATTGAACCAATATCAT
ACCTGAGGGTTTGTTGTTTCTAAGCCCTTGAATGTATCGAACTATCCCGG
TTGAGCCATTAATCAATTTATCTTCAACATCTTTGTTGATTGTGAGCATG
ACTCTAGCTCCAACACATATCGTCAATTCCTTTGGTAGCCCTGCAGTCTC
ATTGATTGGCATATCTTTCTTTAAGCTAACTTTAGTTCTTGACTCATCTT
TTGCTAAAGAGGTATGTTTATTACCCCATTCTTTACATTGTCTCAAGCAA
AGAGAATTTTGCTGATCTTTTAGTCGGTTAGTTATGTacattttcatgaa
attctCAGGCCATTCAGTTGTATCAGTCTGTTCGAAAGATGAAATCTTTT
CGATATCAGCTGACGTATGGTTACCTTCACGAAGCCTATTAAGTAATTCA
GCGAATTCGGAATCTCCACTTTGTCTAACTATTTCCTCTAACTCGTAAAG
TTGGNTTTCGATATCAGCTGACGTATGGTTACCTTCACGAAGCCTATTAA
GTAATTCAGCGAATTCGGAATCTCCACTTTGTCTAACTATTTCCTCTAAC
TCGTAAAGTTGGAATTCGTCCCATGCGAATCTTAAACCTTTTGGGTCGTA
TATTGAGTTTTGACCAACAGGTGTCAACTGAAAAAAGTCTCCAATCAATA
ACAAGGAAATGCCACCAAAcgaatctttattttctttgatattttgcaaT
CTTAAATTCAAATCATCAAAACTTTTGTCACCAATCATAGAGATTTCGTC
AATTATGAGAATCCTTAAGTATTTAAATTTTACTCTCAGATTTTGCATAT
TTGAATTGCTGAGTGATTTATTAATAATGTATGTCCCCTTTCCATATATC
GGTAATTTCAACACTGAGTGCAAGGTGGTTCCGTCAATGCTTGCTGCTGC
TTTACCAGTTGATGCAGTTACAAGAACAGATGGTTGTGTG Run BLAST on NCBI transcript from alignment at sc0005456:7..4379- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044363 ID=TCONS_00044363|Name=TCONS_00044363|organism=Clytia hemisphaerica|type=transcript|length=4373bp|location=Sequence derived from alignment at sc0005456:7..4379- (Clytia hemisphaerica)
ACTATGAACATTATAATGAAAGAATGGAAATTTAAGGCAGCAATAAATTC
TTTAAAACATGAAAAGTATAAATCCACAGAGCATAAAGTGATTAAATCTT
GAAAGAGACAAACAGTGTTTATTAAAAGAGCAAAAAAATACTGACACTGT
AAACAATCATTCAGAAATAAATTAAAACTGAAGTAAGAACAAATTTGATT
TCATTATTCAGTTTTCATTTCATCATAGATTGCGATTCATGTGGCGGAGT
TGGGGATGGGGAAGGGGAAGGGGGGAGCAATAAAATTACAAAGTCAATTC
TATTTATTTACAAAGTCCTATATATACATTTTACATTTAAACAAAACATA
CATTAAAATATACAGTTGAATTACCGAATTTTTAATTATCAATATGAAAA
TTCTAAGAGTATGGAACNAGATGAATTACCGAATTTTTAATTATCAATTA
TGAAAATTCTAAGAGTATGGAATGAGGTTAACAAAAATAGCAAAGTGATC
ACTGAAAGGAGATGGCATCCACCCTGCTGCATCGGAGCAATTATTTTGGA
AGATGAGATCTAAAATATTTCCATCGATATGAGTGGGATATTGACAACGC
TGGTGAAAGATATGCGGTGGTAATAATTCATTCAGATCATTTCTGTTATC
AGGCAAGTTGAAATCACCAAGAATTACTGTCGAGTATGTGGCAACGTCAA
TTTGCTGTTCAATTTGATCGAGTTCGATTTGCAGCGATTGTATAAACAAA
GGAATTGAACTTGCCGGAGGTCTGTAAATTAGAACGAGTAAAATATATTC
ACCATTGACCATGACCAAAGACGGAAGTAATTCTATGTTACTAACTGTAT
TTAATAACTGAATTATTTGAACATGATTTGTATCATAAGTTATTGCTNTA
AATTAAAACGAGTAAAATATATTCACCATTGACCATGACCAAAGACGGAA
GTAATTCTATGTTACTAACTGTATTTAATAACTGAATTATTTGAACATGA
TTCGTATCATAAGTTATTGCTAGTCCATGTTCAGTTTGTTTGTGTAATGT
TTTCCAAGTAGATAAGTTTGGATTATCCTCTACCCTTTTGGCAGTATTTC
TACCAGTTTCTGTAAAACATAGCAAGCAGCATCTAGAGGTGTAAATTTTT
TGAGATAGGAAATGCTCAATATGCATATTCCATGATCTAATATTGAAAAG
ACACAAGTTTGGACCGTTCATTCTTTCCAACGGATGAGTTAATAATAAAG
CCTTATTCGATCTCATTTCCTCCATTGCTTTTAGGGCCTTATTATTTACA
ACAATATGTTTTTCAGGCTTGAAATTCAATAAATGTATATTGTTACTAGA
TGTGGCACGAGAAAGTAGTGTGTATAGAAGCCCTGGTCCAACTGGTGTTA
ACCCTTTCCCACTTCTAGTTGATTGATCTAAATTCCCACTAGCGTATTCC
AATGTACTACCTTGTGCTTTGTGAATCGTAGTAGCAAATGCAACAATCAA
TGGGAACTGTTTTCTTGTAATTTCAATGTCATTGAATTTAAAAGTTTTTG
TTTCTGGGTAAATAGGAACGCATGATTTGTATTCATATTTTAATCTCGAG
TCTTTCAGTTTGTTACCAGATGAGGGATTGTCAAATTGAACCAATATCAT
ACCTGAGGGTTTGTTGTTTCTAAGCCCTTGAATGTATCGAACTATCCCGG
TTGAGCCATTAATCAATTTATCTTCAACATCTTTGTTGATTGTGAGCATG
ACTCTAGCTCCAACACATATCGTCAATTCCTTTGGTAGCCCTGCAGTCTC
ATTGATTGGCATATCTTTCTTTAAGCTAACTTTAGTTCTTGACTCATCTT
TTGCTAAAGAGGTATGTTTATTACCCCATTCTTTACATTGTCTCAAGCAA
AGAGAATTTTGCTGATCTTTTAGTCGGTTAGTTATGTACATTTTCATGAA
ATTCTCAGGCCATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTTGAAAGTTTTTGTTTCTGGGTAAATAGGA
ACGCATGATTTGTATTCATATTTTAATCTCGAGTCTTTCAGTTTGTTACC
AGATGAGGGATTGTCAAATTGAACCAATATCATACCCGAGGGTTTGTTGT
TTCTAAGCCCTTGAATGTATCGAACTATCCCGGTTGAGCCATTAATCAAT
TTATCTTCAACATCTTTGTTGATCGTGAGCATGACTCTAGCTCCAACACA
TATCGTCAATTCGTTTGGTAGCCCTGCAGTCTCATTGATTGGCATATCTT
TCTTTAAGCTAACTTTAGCTCTTGACTCATCTTTTGCTAAGGAGGTATGT
TTATTACCCCATTCTTTACATTGTCTCAAGCAAAGAGAATTTTGCTGATC
TTTTAGTCGGTTAGTTATGTACATTTTCATAAAATTCTCAGGCCATTCAG
TTGTATCAGTCTGTTCGAAAGATGAAATCTTTTCGATATCAGCTGACGTA
TGGTTACCTTCACGAAGCCTATTAAGTAATTCAGCGAATTCGGAATCTCC
ACTTTGTCTAACTATTTCCTCTAACTCGTAAAGTTGGNTTTCGATATCAG
CTGACGTATGGTTACCTTCACGAAGCCTATTAAGTAATTCAGCGAATTCG
GAATCTCCACTTTGTCTAACTATTTCCTCTAACTCGTAAAGTTGGAATTC
GTCCCATGCGAATCTTAAACCTTTTGGGTCGTATATTGAGTTTTGACCAA
CAGGTGTCAACTGAAAAAAGTCTCCAATCAATAACAAGGAAATGCCACCA
AACGAATCTTTATTTTCTTTGATATTTTGCAATCTTAAATTCAAATCATC
AAAACTTTTGTCACCAATCATAGAGATTTCGTCAATTATGAGAATCCTTA
AGTATTTAAATTTTACTCTCAGATTTTGCATATTTGAATTGCTGAGTGAT
TTATTAATAATGTATGTCCCCTTTCCATATATCGGTAATTTCAACACTGA
GTGCAAGGTGGTTCCGTCAATGCTTGCTGCTGCTTTACCAGTTGATGCAG
TTACAAGAACAGATGGTTGTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044363-exon-sc0005456-1575043694:2422..4379 | TCONS_00044363-exon-sc0005456-1575043694:2422..4379 | Clytia hemisphaerica | exon |
| TCONS_00044363-exon-sc0005456-1575043694:7..638 | TCONS_00044363-exon-sc0005456-1575043694:7..638 | Clytia hemisphaerica | exon |
| TCONS_00044363-exon-sc0005456-1510915933:2422..4379 | TCONS_00044363-exon-sc0005456-1510915933:2422..4379 | Clytia hemisphaerica | exon |
| TCONS_00044363-exon-sc0005456-1510915933:7..638 | TCONS_00044363-exon-sc0005456-1510915933:7..638 | Clytia hemisphaerica | exon |
| TCONS_00044363-exon-sc0005456-1491911889:2422..4379 | TCONS_00044363-exon-sc0005456-1491911889:2422..4379 | Clytia hemisphaerica | exon |
| TCONS_00044363-exon-sc0005456-1491911889:7..638 | TCONS_00044363-exon-sc0005456-1491911889:7..638 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005456 | supercontig | sc0005456:7..4379 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010285 | DNA_helicase_pif1-like |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
The following BLAST results are available for this feature:
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