TCONS_00044356 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044356
Unique NameTCONS_00044356
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length714

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044356 ID=TCONS_00044356|Name=TCONS_00044356|organism=Clytia hemisphaerica|type=transcript|length=714bp
gctttaaaggttttcttctttgttttggGAGCTCTTTATGTTGTTTATTT
GATCGTTCTGCTGATCCAAGCTTTTCAAGATCTGAAAAATATGCCATACT
TTGATGTTCGATTGAagtttttgacgattttgatgTTACTTGTTGTATTG
ATAAGccTTGTTGCAGTTTTCCTGCGGTTTGGCTCTGCTGTTTTGGAAGA
CAATTTTGTTGCCGATGTATCAACCAGATACAAGAACTCTGTTGAGTTTT
TAGCTTTCTATGGTCTTTTCAATTTGTACCTCTACACCATGGCTTACATG
TACACACCACTTTCAAGTAAAGGGAGTGGTTTAAAGCCTGTACCATCATC
CTTCTCAATTATCGCTGACTCAGATGACGAAAACCTTCCTTACCGGGAAG
TTAAGAAGAAGAAGCTCACAAACTTGGACGATTTTACAAGCGATGACGAA
ATAAATGGTTGAcagggttgttttttttttacactttcacGCAATAGCAA
TTTGATACGTTTTTCTTACTATTGTTGtgttatttttattaatttgcTTC
ATTTATTTATTNAGGGTTgttgttttttacactttcacGCAATAGCAATT
TGATACGTTTTTCTTACTATTGTTGTGTTATCTTTATTAATTTgcttcat
ttatttattttcttcgtTTTTAGTGGGTTattcatttttcagaaaattta
ctTCTAAAATCTAG
Run BLAST on NCBI

protein sequence of TCONS_00044356-protein

>TCONS_00044356-protein ID=TCONS_00044356-protein|Name=TCONS_00044356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
ALKVFFFVLGALYVVYLIVLLIQAFQDLKNMPYFDVRLKFLTILMLLVVL
ISLVAVFLRFGSAVLEDNFVADVSTRYKNSVEFLAFYGLFNLYLYTMAYM
YTPLSSKGSGLKPVPSSFSIIADSDDENLPYREVKKKKLTNLDDFTSDDE
ING
Run BLAST on NCBI

transcript from alignment at sc0005439:2293..4450+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044356 ID=TCONS_00044356|Name=TCONS_00044356|organism=Clytia hemisphaerica|type=transcript|length=2158bp|location=Sequence derived from alignment at sc0005439:2293..4450+ (Clytia hemisphaerica)
gctttaaaggttttcttctttgttttggGAGCTCTTTATGTTGTTTATTT
GATCGTTCTGCTGATCCAAGCTTTTCAAGATCTGAAAAATATGCCATACT
TTGGTAAGTAAAGTCTAAAAACAATGAacattatattattttttattttt
taaagcacAATGCTTATGATTTTTCCGATTGAAGTGGTTGGTAACGAGTG
AAAATACTGTCAACAAAATAtacgggtttttttttaataactttgAGCAA
AGATTGTATTTCGCGCAACTAAGTTTGTAAGTAGCGCTCGTGGCAGTTAT
AGATTAAGATGTAGCCTGTATTTCGAACGAACCTATGATAAACATTAGCA
AATCTCCAACTCCAACTCCATGTTTTTAAAGCTTTGTTTCCATCATTTCA
TCACTCTTTTTCTTTCAGATGTTCGATTGAagtttttgacgattttgatg
TTACTTGTTGTATTGATAAGGTAAGGATTCACCAAACATCTGAACAtatg
aaacaataaattcgCATCTGAACTAAGATATCTTGGAAAttttttatgtc
tttctttatatctatttcaattttttcttttagccTTGTTGCAGTTTTCC
TGCGGTTTGGCTCTGCTGTTTTGGAAGACAATTTTGTTGCCGATGTATCA
ACCAGATACAAGAACTATATCCTTTCAACACATAATCTTCTAAGTTTCTT
AACAAACATTATGATATCCTCCATTTCATAAATATCATAGTAgataaggt
tttatctttacTTTTACTGCCTTTTACAAAACGAAATTAACACATTAAaa
cgaattttatttgcttttttaagGACACCAAggttggttttaattaaggg
ggtttttattaacacgaaatttttcaattcgtgttaataaaatgactagt
aatgttttgtaataagATATTAAGGGTTTATCTTTACTTTTACTGTATTT
TACAAAACGATCACAGAAAGAGTTTTTGTATGGatattgtgttttgtttt
tccttGACGACTTCAACACCTGTTGAGTTTTTAGCTTTCTATGGTCTTTT
CAATTTGTACCTCTACACCATGGCTTACATGTACACACCACTTTCAAGTA
AAGGTAGGAAAAGTTATCGACTTCTAAATGTTTTCCATGAATCTACGTCA
AAGATTTTTATGATATAGACAGGCGCACCTCTTATGCTGATTGcagaatt
aacaaaataatttttaaaactttttactaTCGCAGCGCGAGAAGGGATTG
TTTTCAAATGTTGTGTAAGCAGATAGTAGGAAATACGTTAAATGGTGTCT
TTTAAAACCACTGTGGTATCAAGCTCGTTCATTATTGAACTGAATACATA
TATAACAAACAAAGACTCCAGTTCTGATTCTTGTTTTTAATATACTCGTG
TTCTTGCATTCTTCACAGGGAGTGGTTTAAAGCCTGTACCATCATCCTTC
TCAATTATCGCTGACTCAGATGACGAAAACCTTCCTTACCGGTAAATGTT
ATCTCTTATAACTCGAACTATCAACGAATAGAATGATTCTGGTGTTCGAA
TCATTAGTAACTCAACCGTATAAAAAGTTGATtggtaaaaaaataataaa
atgccATTCCATATTATATGCATCTAGGCGAGTGAACAAACAACTCCGGG
TGGTAATCGGAGAAGATTCTCCAGGGactattttttcatctttccagGGA
GGGGGtaaagttttattaaaaaattttcagggggtaaaggttctgaaccc
tctacaACTTGAACGATTCATTCCACCCCCTTGCCGTTCGAGATGTGGAG
ATAAGACTTTCAAAGAAGTTTTAAACGCATTAATTTCAGGGAAGTTAAGA
AGAAGAAGCTCACAAACTTGGACGATTTTACAAGCGATGACGAAATAAAT
GGTTGAcagggttgttttttttttacactttcacGCAATAGCAATTTGAT
ACGTTTTTCTTACTATTGTTGtgttatttttattaatttgcTTCATTTAT
TTATTNAGGGTTgttgttttttacactttcacGCAATAGCAATTTGATAC
GTTTTTCTTACTATTGTTGTGTTATCTTTATTAATTTgcttcatttattt
attttcttcgtTTTTAGTGGGTTattcatttttcagaaaatttactTCTA
AAATCTAG

Coding sequence (CDS) from alignment at sc0005439:2293..4450+

>TCONS_00044356 ID=TCONS_00044356|Name=TCONS_00044356|organism=Clytia hemisphaerica|type=CDS|length=2772bp|location=Sequence derived from alignment at sc0005439:2293..4450+ (Clytia hemisphaerica)
gctttaaaggttttcttctttgttttggGAGCTCTTTATGTTGTTTATTT
GATCGTTCTGCTGATCCAAGCTTTTCAAGATCTGAAAAATATGCCATACT
TTGATGTTCGATTGAagtttttgacgattttgatgTTACTTGTTGTATTG
ATAAGccTTGTTGCAGTTTTCCTGCGGTTTGGCTCTGCTGTTTTGGAAGA
CAATTTTGTTGCCGATGTATCAACCAGATACAAGAACTCTGTTGAGTTTT
TAGCTTTCTATGGTCTTTTCAATTTGTACCTCTACACCATGGCTTACATG
TACACACCACTTTCAAGTAAAGGGAGTGGTTTAAAGCCTGTACCATCATC
CTTCTCAATTATCGCTGACTCAGATGACGAAAACCTTCCTTACCGGGAAG
TTAAGAAGAAGAAGCTCACAAACTTGGACGATTTTACAAGCGATGACGAA
ATAAATGGTTGAgctttaaaggttttcttctttgttttggGAGCTCTTTA
TGTTGTTTATTTGATCGTTCTGCTGATCCAAGCTTTTCAAGATCTGAAAA
ATATGCCATACTTTGATGTTCGATTGAagtttttgacgattttgatgTTA
CTTGTTGTATTGATAAGccTTGTTGCAGTTTTCCTGCGGTTTGGCTCTGC
TGTTTTGGAAGACAATTTTGTTGCCGATGTATCAACCAGATACAAGAACT
CTGTTGAGTTTTTAGCTTTCTATGGTCTTTTCAATTTGTACCTCTACACC
ATGGCTTACATGTACACACCACTTTCAAGTAAAGGGAGTGGTTTAAAGCC
TGTACCATCATCCTTCTCAATTATCGCTGACTCAGATGACGAAAACCTTC
CTTACCGGGAAGTTAAGAAGAAGAAGCTCACAAACTTGGACGATTTTACA
AGCGATGACGAAATAAATGGTTGAgctttaaaggttttcttctttgtttt
ggGAGCTCTTTATGTTGTTTATTTGATCGTTCTGCTGATCCAAGCTTTTC
AAGATCTGAAAAATATGCCATACTTTGATGTTCGATTGAagtttttgacg
attttgatgTTACTTGTTGTATTGATAAGccTTGTTGCAGTTTTCCTGCG
GTTTGGCTCTGCTGTTTTGGAAGACAATTTTGTTGCCGATGTATCAACCA
GATACAAGAACTCTGTTGAGTTTTTAGCTTTCTATGGTCTTTTCAATTTG
TACCTCTACACCATGGCTTACATGTACACACCACTTTCAAGTAAAGGGAG
TGGTTTAAAGCCTGTACCATCATCCTTCTCAATTATCGCTGACTCAGATG
ACGAAAACCTTCCTTACCGGGAAGTTAAGAAGAAGAAGCTCACAAACTTG
GACGATTTTACAAGCGATGACGAAATAAATGGTTGAgctttaaaggtttt
cttctttgttttggGAGCTCTTTATGTTGTTTATTTGATCGTTCTGCTGA
TCCAAGCTTTTCAAGATCTGAAAAATATGCCATACTTTGATGTTCGATTG
AagtttttgacgattttgatgTTACTTGTTGTATTGATAAGccTTGTTGC
AGTTTTCCTGCGGTTTGGCTCTGCTGTTTTGGAAGACAATTTTGTTGCCG
ATGTATCAACCAGATACAAGAACTCTGTTGAGTTTTTAGCTTTCTATGGT
CTTTTCAATTTGTACCTCTACACCATGGCTTACATGTACACACCACTTTC
AAGTAAAGGGAGTGGTTTAAAGCCTGTACCATCATCCTTCTCAATTATCG
CTGACTCAGATGACGAAAACCTTCCTTACCGGGAAGTTAAGAAGAAGAAG
CTCACAAACTTGGACGATTTTACAAGCGATGACGAAATAAATGGTTGAgc
tttaaaggttttcttctttgttttggGAGCTCTTTATGTTGTTTATTTGA
TCGTTCTGCTGATCCAAGCTTTTCAAGATCTGAAAAATATGCCATACTTT
GATGTTCGATTGAagtttttgacgattttgatgTTACTTGTTGTATTGAT
AAGccTTGTTGCAGTTTTCCTGCGGTTTGGCTCTGCTGTTTTGGAAGACA
ATTTTGTTGCCGATGTATCAACCAGATACAAGAACTCTGTTGAGTTTTTA
GCTTTCTATGGTCTTTTCAATTTGTACCTCTACACCATGGCTTACATGTA
CACACCACTTTCAAGTAAAGGGAGTGGTTTAAAGCCTGTACCATCATCCT
TCTCAATTATCGCTGACTCAGATGACGAAAACCTTCCTTACCGGGAAGTT
AAGAAGAAGAAGCTCACAAACTTGGACGATTTTACAAGCGATGACGAAAT
AAATGGTTGAgctttaaaggttttcttctttgttttggGAGCTCTTTATG
TTGTTTATTTGATCGTTCTGCTGATCCAAGCTTTTCAAGATCTGAAAAAT
ATGCCATACTTTGATGTTCGATTGAagtttttgacgattttgatgTTACT
TGTTGTATTGATAAGccTTGTTGCAGTTTTCCTGCGGTTTGGCTCTGCTG
TTTTGGAAGACAATTTTGTTGCCGATGTATCAACCAGATACAAGAACTCT
GTTGAGTTTTTAGCTTTCTATGGTCTTTTCAATTTGTACCTCTACACCAT
GGCTTACATGTACACACCACTTTCAAGTAAAGGGAGTGGTTTAAAGCCTG
TACCATCATCCTTCTCAATTATCGCTGACTCAGATGACGAAAACCTTCCT
TACCGGGAAGTTAAGAAGAAGAAGCTCACAAACTTGGACGATTTTACAAG
CGATGACGAAATAAATGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027989XLOC_027989Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044356-proteinTCONS_00044356-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044356-exon-sc0005439-1491911889:2293..2395TCONS_00044356-exon-sc0005439-1491911889:2293..2395Clytia hemisphaericaexon
TCONS_00044356-exon-sc0005439-1510915933:2293..2395TCONS_00044356-exon-sc0005439-1510915933:2293..2395Clytia hemisphaericaexon
TCONS_00044356-exon-sc0005439-1575043694:2293..2395TCONS_00044356-exon-sc0005439-1575043694:2293..2395Clytia hemisphaericaexon
TCONS_00044356-exon-sc0005439-1491911889:2711..2762TCONS_00044356-exon-sc0005439-1491911889:2711..2762Clytia hemisphaericaexon
TCONS_00044356-exon-sc0005439-1510915933:2711..2762TCONS_00044356-exon-sc0005439-1510915933:2711..2762Clytia hemisphaericaexon
TCONS_00044356-exon-sc0005439-1575043694:2711..2762TCONS_00044356-exon-sc0005439-1575043694:2711..2762Clytia hemisphaericaexon
TCONS_00044356-exon-sc0005439-1491911889:2876..2958TCONS_00044356-exon-sc0005439-1491911889:2876..2958Clytia hemisphaericaexon
TCONS_00044356-exon-sc0005439-1510915933:2876..2958TCONS_00044356-exon-sc0005439-1510915933:2876..2958Clytia hemisphaericaexon
TCONS_00044356-exon-sc0005439-1575043694:2876..2958TCONS_00044356-exon-sc0005439-1575043694:2876..2958Clytia hemisphaericaexon
TCONS_00044356-exon-sc0005439-1491911889:3312..3395TCONS_00044356-exon-sc0005439-1491911889:3312..3395Clytia hemisphaericaexon
TCONS_00044356-exon-sc0005439-1510915933:3312..3395TCONS_00044356-exon-sc0005439-1510915933:3312..3395Clytia hemisphaericaexon
TCONS_00044356-exon-sc0005439-1575043694:3312..3395TCONS_00044356-exon-sc0005439-1575043694:3312..3395Clytia hemisphaericaexon
TCONS_00044356-exon-sc0005439-1491911889:3711..3783TCONS_00044356-exon-sc0005439-1491911889:3711..3783Clytia hemisphaericaexon
TCONS_00044356-exon-sc0005439-1510915933:3711..3783TCONS_00044356-exon-sc0005439-1510915933:3711..3783Clytia hemisphaericaexon
TCONS_00044356-exon-sc0005439-1575043694:3711..3783TCONS_00044356-exon-sc0005439-1575043694:3711..3783Clytia hemisphaericaexon
TCONS_00044356-exon-sc0005439-1491911889:4132..4450TCONS_00044356-exon-sc0005439-1491911889:4132..4450Clytia hemisphaericaexon
TCONS_00044356-exon-sc0005439-1510915933:4132..4450TCONS_00044356-exon-sc0005439-1510915933:4132..4450Clytia hemisphaericaexon
TCONS_00044356-exon-sc0005439-1575043694:4132..4450TCONS_00044356-exon-sc0005439-1575043694:4132..4450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005439supercontigsc0005439:2293..4450 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
63.0347	62.4047	29.4547	29.7127	30.6011	25.292	32.7489	35.5846	41.4473	38.0219	49.2049	44.6143	25.13	23.6849	22.2041	25.3286	16.9841	18.301	17.66	18.9254	23.8789	19.9074	27.7043	24.6645	14.6489	18.795	21.5923	19.6016	15.887	17.0487
Blast
[Close]
BLAST of TCONS_00044356 vs. Swiss-Prot (Human)
Match: TM181 (Transmembrane protein 181 OS=Homo sapiens GN=TMEM181 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.713e-22
Identity = 67/129 (51.94%), Postives = 101/129 (78.29%), Query Frame = 1 
Query:    1 ALKVFFFVLGAXXXXXXXXXXXQAFQDLKNMPYFDVRXXXXXXXXXXXXXXXXXXXXXRFGSAVLEDNFVADVSTRYKNSVEFLAFYGLFNLYLYTMAYMYTPLSSK--GSGLKPVPSSFSIIADSDDE 381
             +KVFF V+ A+Y++YL+ L+++A  +L++MPY D+RLKFLT L  +V++IS+  ++LRFG+ VL+DNFVA++ST Y+NS EFL+FYGL N YLYT+A++Y+P  +    S LK  P +FS++ DSDD+
Sbjct:  456 GMKVFFMVVAAVYILYLLFLIVRACSELRHMPYVDLRLKFLTALTFVVLVISIAILYLRFGAQVLQDNFVAELSTHYQNSAEFLSFYGLLNFYLYTLAFVYSPSKNALYESQLKDNP-AFSMLNDSDDD 583
The following BLAST results are available for this feature:
BLAST of TCONS_00044356 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM1811.713e-2251.94Transmembrane protein 181 OS=Homo sapiens GN=TMEM1... [more]
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