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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044288 ID=TCONS_00044288|Name=TCONS_00044288|organism=Clytia hemisphaerica|type=transcript|length=900bp
AAAAAAGCTAAACTCTGAGGAAAAATCTCAAACTGAAATTTATCGAGTCA
GAGGTGATACAAAAAACGGTTTCGCTGTAAAGaagctgaaaataaaaaaa
caaNNNNNNNNTATCGAGTCAGAGGTGATACAAAAAACGGTTTCGCTGTA
AAGAagctgaaaatcaaaaaacaacaatagaAACAAACCACTATAAACAA
GCACCAAATAGCAATAAAGCAAACCCTACCCCAAGAACTATACCTGAAAT
AAGAATCCTATCAACAAATGTCGATCAATTTACGAAAGCAAAGAAAggaa
tattaaataaaataaatcaacTCGAAAAACCGCACCTAATCGCAATTTGT
GAAGTAAAACCCAAACatgatgaaaaatggcaaatcCACGAATACGAAAT
GAAAGACTACAAAGTTGTTAACTCCACTAATACCGATAACAACAAAGGTC
GAGGAATCGTCATATTGACACACTCATCAATAGACCATCTAGTTGCTGAC
ATCGAAAGTCCTGTTGAATTCGAAGAAACCTGTATTATCGAGATTCGTCT
AGCAAAGAAAGACAAACTTGTATTTGCGTGTATATACAGAAGCCCTACGA
AGCAAGCTAACTCGCACGAAAACAATTCTATGTTGAACAGCCTGTTGAAG
TCATTGAGTCAAGACAAGAGATATTCACACAAATGTATAGTTGGAGATTT
TAATCTGCCAACAATAGATTGGGAAAACTGGACAACCCCCCATATTGAGG
AcagtaaagaagaaaaattcttgGATGCACTACGAGATTCATTTCTTTAT
CAATACGTTAAAGAGCCGACGAGATGTAGAGGAACAGACGATCCGTCTCT
AGTAGACCTCATTCTAACCAGTGAATATAACCAAGTCAACAATCTCAAAT Run BLAST on NCBI protein sequence of TCONS_00044288-protein >TCONS_00044288-protein ID=TCONS_00044288-protein|Name=TCONS_00044288-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MKDYKVVNSTNTDNNKGRGIVILTHSSIDHLVADIESPVEFEETCIIEIR
LAKKDKLVFACIYRSPTKQANSHENNSMLNSLLKSLSQDKRYSHKCIVGD
FNLPTIDWENWTTPHIEDSKEEKFLDALRDSFLYQYVKEPTRCRGTDDPS
LVDLILTSEYNQVNNLK Run BLAST on NCBI transcript from alignment at sc0005305:1..900 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044288 ID=TCONS_00044288|Name=TCONS_00044288|organism=Clytia hemisphaerica|type=transcript|length=900bp|location=Sequence derived from alignment at sc0005305:1..900 (Clytia hemisphaerica)
ATTTGAGATTGTTGACTTGGTTATATTCACTGGTTAGAATGAGGTCTACT
AGAGACGGATCGTCTGTTCCTCTACATCTCGTCGGCTCTTTAACGTATTG
ATAAAGAAATGAATCTCGTAGTGCATCcaagaatttttcttctttactgT
CCTCAATATGGGGGGTTGTCCAGTTTTCCCAATCTATTGTTGGCAGATTA
AAATCTCCAACTATACATTTGTGTGAATATCTCTTGTCTTGACTCAATGA
CTTCAACAGGCTGTTCAACATAGAATTGTTTTCGTGCGAGTTAGCTTGCT
TCGTAGGGCTTCTGTATATACACGCAAATACAAGTTTGTCTTTCTTTGCT
AGACGAATCTCGATAATACAGGTTTCTTCGAATTCAACAGGACTTTCGAT
GTCAGCAACTAGATGGTCTATTGATGAGTGTGTCAATATGACGATTCCTC
GACCTTTGTTGTTATCGGTATTAGTGGAGTTAACAACTTTGTAGTCTTTC
ATTTCGTATTCGTGgatttgccatttttcatcatGTTTGGGTTTTACTTC
ACAAATTGCGATTAGGTGCGGTTTTTCGAgttgatttattttatttaata
ttccTTTCTTTGCTTTCGTAAATTGATCGACATTTGTTGATAGGATTCTT
ATTTCAGGTATAGTTCTTGGGGTAGGGTTTGCTTTATTGCTATTTGGTGC
TTGTTTATAGTGGTTTGTTtctattgttgttttttgattttcagctTCTT
TACAGCGAAACCGTTTTTTGTATCACCTCTGACTCGATANNNNNNNNttg
tttttttattttcagcttCTTTACAGCGAAACCGTTTTTTGTATCACCTC
TGACTCGATAAATTTCAGTTTGAGATTTTTCCTCAGAGTTTAGCTTTTTT
Coding sequence (CDS) from alignment at sc0005305:1..900 >TCONS_00044288 ID=TCONS_00044288|Name=TCONS_00044288|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at sc0005305:1..900 (Clytia hemisphaerica)
TTTGAGATTGTTGACTTGGTTATATTCACTGGTTAGAATGAGGTCTACTA
GAGACGGATCGTCTGTTCCTCTACATCTCGTCGGCTCTTTAACGTATTGA
TAAAGAAATGAATCTCGTAGTGCATCcaagaatttttcttctttactgTC
CTCAATATGGGGGGTTGTCCAGTTTTCCCAATCTATTGTTGGCAGATTAA
AATCTCCAACTATACATTTGTGTGAATATCTCTTGTCTTGACTCAATGAC
TTCAACAGGCTGTTCAACATAGAATTGTTTTCGTGCGAGTTAGCTTGCTT
CGTAGGGCTTCTGTATATACACGCAAATACAAGTTTGTCTTTCTTTGCTA
GACGAATCTCGATAATACAGGTTTCTTCGAATTCAACAGGACTTTCGATG
TCAGCAACTAGATGGTCTATTGATGAGTGTGTCAATATGACGATTCCTCG
ACCTTTGTTGTTATCGGTATTAGTGGAGTTAACAACTTTGTAGTCTTTCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044288-exon-sc0005305-1491911889:1..900 | TCONS_00044288-exon-sc0005305-1491911889:1..900 | Clytia hemisphaerica | exon |
| TCONS_00044288-exon-sc0005305-1510915933:1..900 | TCONS_00044288-exon-sc0005305-1510915933:1..900 | Clytia hemisphaerica | exon |
| TCONS_00044288-exon-sc0005305-1575043694:1..900 | TCONS_00044288-exon-sc0005305-1575043694:1..900 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005305 | supercontig | sc0005305:1..900 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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