TCONS_00044269 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044269
Unique NameTCONS_00044269
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length849

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044269 ID=TCONS_00044269|Name=TCONS_00044269|organism=Clytia hemisphaerica|type=transcript|length=849bp
gcaatattttttttattggcaaatatttttttattgacaataattattga
atgaaaatatgaaataattgaatatgaatattgaaaattgaatataaata
tagaaaattgaacatgaatatagaaaattgaatataaatatggatattga
ataaaaataaaaaagtattgaattttGCTACATGCGGCCAGCCATATTGC
ATACATCCAGATGTTGTTTATTATGTTTCACAGAGACTGGTAATAACGCT
AGAGGAAACATTGAGGATAGTGAAAAACTACGACATTGGAAAACGATTCA
TCAGAGAACTGCCCATGGCTTAGCAATCAGTTACGATACAAATCAAGTAA
ATGTAATAAAAGAACTGAACACTGTTAGTGAATTAGAATTACTTCCACTT
TTGGTGAGCATAAACGACAAACATTATTTGATTGCTTTGATATATAGACC
TCCAACGAGCTCTGTTCCTTTATTTGCACAATCTCTTCAAATTGAGCTTG
ATAATCTACGGGGACAGATTAATGCGGAAAATTACTCAACCATTGTTCTT
GGTGATTTCAATTTACCTGACAACAAAGAAATCGTCAATGAAGCATTACC
ACCAAATANCTCTTCAAATTGAGCTTGATAATATACGGGGACAGATTAAT
GCGGAAAATTACTCAACCATTGTTCTTGGTGATTTCAATTTACCTGACAA
CAAAGAAATTGTCAATGAAGCATTACCACCAAATATCTTTCATCAAAGAT
GCGAACATCCAACACATATCgatagaaatattttagatCTTATTTTTGAC
GATCATCGCGAAACTCCAGCTCAATGGATGCCATCACCATACAgtgatc
Run BLAST on NCBI

protein sequence of TCONS_00044269-protein

>TCONS_00044269-protein ID=TCONS_00044269-protein|Name=TCONS_00044269-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MRPAILHTSRCCLLCFTETGNNARGNIEDSEKLRHWKTIHQRTAHGLAIS
YDTNQVNVIKELNTVSELELLPLLVSINDKHYLIALIYRPPTSSVPLFAQ
SLQIELDNLRGQINAENYSTIVLGDFNLPDNKEIVNEALPPNXSSN
Run BLAST on NCBI

transcript from alignment at sc0005274:17..865

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044269 ID=TCONS_00044269|Name=TCONS_00044269|organism=Clytia hemisphaerica|type=transcript|length=849bp|location=Sequence derived from alignment at sc0005274:17..865 (Clytia hemisphaerica)
gatcacTGTATGGTGATGGCATCCATTGAGCTGGAGTTTCGCGATGATCG
TCAAAAATAAGatctaaaatatttctatcGATATGTGTTGGATGTTCGCA
TCTTTGATGAAAGATATTTGGTGGTAATGCTTCATTGACAATTTCTTTGT
TGTCAGGTAAATTGAAATCACCAAGAACAATGGTTGAGTAATTTTCCGCA
TTAATCTGTCCCCGTATATTATCAAGCTCAATTTGAAGAGNTATTTGGTG
GTAATGCTTCATTGACGATTTCTTTGTTGTCAGGTAAATTGAAATCACCA
AGAACAATGGTTGAGTAATTTTCCGCATTAATCTGTCCCCGTAGATTATC
AAGCTCAATTTGAAGAGATTGTGCAAATAAAGGAACAGAGCTCGTTGGAG
GTCTATATATCAAAGCAATCAAATAATGTTTGTCGTTTATGCTCACCAAA
AGTGGAAGTAATTCTAATTCACTAACAGTGTTCAGTTCTTTTATTACATT
TACTTGATTTGTATCGTAACTGATTGCTAAGCCATGGGCAGTTCTCTGAT
GAATCGTTTTCCAATGTCGTAGTTTTTCACTATCCTCAATGTTTCCTCTA
GCGTTATTACCAGTCTCTGTGAAACATAATAAACAACATCTGGATGTATG
CAATATGGCTGGCCGCATGTAGCaaaattcaatacttttttatttttatt
caatatccatatttatattcaattttctatattcatgttcaattttctat
atttatattcaattttcaatattcatattcaattatttcatattttcatt
caataattattgtcaataaaaaaatatttgccaataaaaaaaatattgc

Coding sequence (CDS) from alignment at sc0005274:17..865

>TCONS_00044269 ID=TCONS_00044269|Name=TCONS_00044269|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at sc0005274:17..865 (Clytia hemisphaerica)
TCAATTTGAAGAGNTATTTGGTGGTAATGCTTCATTGACGATTTCTTTGT
TGTCAGGTAAATTGAAATCACCAAGAACAATGGTTGAGTAATTTTCCGCA
TTAATCTGTCCCCGTAGATTATCAAGCTCAATTTGAAGAGATTGTGCAAA
TAAAGGAACAGAGCTCGTTGGAGGTCTATATATCAAAGCAATCAAATAAT
GTTTGTCGTTTATGCTCACCAAAAGTGGAAGTAATTCTAATTCACTAACA
GTGTTCAGTTCTTTTATTACATTTACTTGATTTGTATCGTAACTGATTGC
TAAGCCATGGGCAGTTCTCTGATGAATCGTTTTCCAATGTCGTAGTTTTT
CACTATCCTCAATGTTTCCTCTAGCGTTATTACCAGTCTCTGTGAAACAT
AATAAACAACATCTGGATGTATGCAATATGGCTGGCCGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027905XLOC_027905Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044269-proteinTCONS_00044269-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044269-exon-sc0005274-1491911889:17..865TCONS_00044269-exon-sc0005274-1491911889:17..865Clytia hemisphaericaexon
TCONS_00044269-exon-sc0005274-1510915933:17..865TCONS_00044269-exon-sc0005274-1510915933:17..865Clytia hemisphaericaexon
TCONS_00044269-exon-sc0005274-1575043694:17..865TCONS_00044269-exon-sc0005274-1575043694:17..865Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005274supercontigsc0005274:17..865 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.88972	1.54355	2.03362	2.0032	1.39376	0.726564	1.3899	0.400328	0.745297	0.56057	0.479206	0.460914	0.691941	0.714517	0.466507	0.455429	1.00656	0.626895	0.946022	0.123327	0.858738	0.993078	0.599283	0.65943	0.985875	1.72575	1.26998	0.75986	1.30519	1.00734
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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