TCONS_00044239 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044239
Unique NameTCONS_00044239
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length243

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044239 ID=TCONS_00044239|Name=TCONS_00044239|organism=Clytia hemisphaerica|type=transcript|length=243bp
GGGGCTCAGGCCCTCGAGCCCAGACCCCTGAATAGGGCGAGCAAACATGA
GcgagaaaaggaaagaaatcaaGGACTTGGGAGAGAGGGCTCGAAGGAAG
AAGACTTGGAAAGGAGAGCTCGAATGAAAAGGACTTGAAAAGGAGAACTT
GGAGGAGAAGGACTTGAACAGAGACTATCGTTAATTATATGCCAGAGTTA
CTAAGTTATTTGATGTTATTTATGTTACGCTTATTTGATATTT
Run BLAST on NCBI

transcript from alignment at sc0005227:1..243

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044239 ID=TCONS_00044239|Name=TCONS_00044239|organism=Clytia hemisphaerica|type=transcript|length=243bp|location=Sequence derived from alignment at sc0005227:1..243 (Clytia hemisphaerica)
AAATATCAAATAAGCGTAACATAAATAACATCAAATAACTTAGTAACTCT
GGCATATAATTAACGATAGTCTCTGTTCAAGTCCTTCTCCTCCAAGTTCT
CCTTTTCAAGTCCTTTTCATTCGAGCTCTCCTTTCCAAGTCTTCTTCCTT
CGAGCCCTCTCTCCCAAGTCCttgatttctttccttttctcgCTCATGTT
TGCTCGCCCTATTCAGGGGTCTGGGCTCGAGGGCCTGAGCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027880XLOC_027880Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044239-exon-sc0005227-1491911889:1..243TCONS_00044239-exon-sc0005227-1491911889:1..243Clytia hemisphaericaexon
TCONS_00044239-exon-sc0005227-1510915933:1..243TCONS_00044239-exon-sc0005227-1510915933:1..243Clytia hemisphaericaexon
TCONS_00044239-exon-sc0005227-1575043694:1..243TCONS_00044239-exon-sc0005227-1575043694:1..243Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005227supercontigsc0005227:1..243 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.04258	1.67164	0	2.63207	0	0	1.46679	0	0	0	2.13529	0	1.0761	1.50879	1.04493	2.30107	0.814776	0	1.38719	1.31831	1.55969	5.66187	3.25429	4.99281	0	1.9746	0	6.46155	5.37059	17.0848
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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