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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044221 ID=TCONS_00044221|Name=TCONS_00044221|organism=Clytia hemisphaerica|type=transcript|length=314bp
GCAGCATTTGGTGTAGAATATTCGATTCGGAATCTGAAACTTTAATGATG
GCGAGCTTTCTATTGTGGATGACACTATGGTCAATGATGTTATCCTTATC
CTGCTTAGTAAAAGGCCAGGAAAATCCATGCAACCCCGATGTTTATAATG
TTTTTGATTCAACGACAATATTTCAACGAAGCAGTGGAAACATTGTACCT
TCAAATTCAAGAAGCTTCATTTGTGATGATGGTATAAACCATGATGTTTG
GCAAAGATTTATCAGCCCAGCTGGCAGTGAAATGCCTACAACGTGTCCAC
CTCAGTTCGCATGT Run BLAST on NCBI protein sequence of TCONS_00044221-protein >TCONS_00044221-protein ID=TCONS_00044221-protein|Name=TCONS_00044221-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
SIWCRIFDSESETLMMASFLLWMTLWSMMLSLSCLVKGQENPCNPDVYNV
FDSTTIFQRSSGNIVPSNSRSFICDDGINHDVWQRFISPAGSEMPTTCPP
QFAC Run BLAST on NCBI transcript from alignment at sc0005190:2..1794+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044221 ID=TCONS_00044221|Name=TCONS_00044221|organism=Clytia hemisphaerica|type=transcript|length=1793bp|location=Sequence derived from alignment at sc0005190:2..1794+ (Clytia hemisphaerica)
GCAGCATTTGGTGTAGAATATTCGGTATGTATTTTGATTCCTTTTAAAGT
CATGAATAGACAATATAATCGTGAAATTTATATTTCTATTAAAAGTGATT
AACAGATAATTTTCTatatttggcttagagatacACCTTTTATGGTCCTA
AGAAATacctccaaagtttttgactcaattattttccaaagctgagatat
tcgaAGACTGTTTAAgaatttttagagatttcaaaagcatgccaaatttg
atACTAACCTACTAAGCGCATATTAAAAGAGCtattaaaaaggttttttc
ttaaAGAAGCATTCATCACCATTTACAGCATTGCCAAAGaagtaaatttc
tttttcaacttttttttttcccaaTAGATTCGGAATCTGAAACTTTAATG
ATGGCGAGCTTTCTATTGTGGATGACACTATGGTCAATGATGTTATCCTT
ATCCTGCTTAGTAAAAGGTTAGTTAATTAAattcatttgagattttttat
aaACAGGGTAGGTGTATTCATTATTTCATAcaaccctttctcacagaccc
gccAAAATATAGATCCCGGTAGTAAATTANAAGGTGTACTCATTATTTCA
TAcaaccctttctcacagacccgccAAAATATAGATCCCGGTAGAAAATT
ATCCTCTAATTTTTATCCAcgctaaaaataatcaaataaacccaATCCTC
ACTGAAAATAGTTTACTATTTCTCCCATCCCCACTAAatattctgacttg
aaaacaatgaaatttaaatccccagctaaaaaaatatgagaatatcaatc
ctTATTGAGTTTCAGATCGTTATGTTTAACCGCCCACCGGctaaaaaaat
cccaccgggtctgtggaAAGGGGTGTGTTCGGGGATGTGTTATTCCATTC
TTTCAGCATTCCAAACAGCAGGATGAGTATTTGTAATTAAAATGTATTAT
TATCATCAACATGAAAGATATGaccaatctgattggctaaaaacgtaaaa
ataaatgctgtatttcatattgtaccgtacaaatataagaccgcgttcaa
aaaaggggtctggtaagcgagaAATCATATTTTATACAATTTTATAATTA
GAAAAGTTTTCTCTTTGCTTCCATTACACAACAACTTATCAAAAGAgttt
ataaaaaatgattttttaatcttatttttaatgaccattcgattcgtttt
tcgaatgtttttatgttgatttcatccaaataaaagtaaaagattgaata
taaaaatattggaagagagaagagagagagagagggagGGACAGAAGAGG
AGACATAAATGGAGagaaaaaagtttgttgatatttttcaagttggtgat
aaaccagttatcataCTTTTACAGACCTCGACTTAAAGACTTGGAAAATA
TGACGAAAAGTCtaaactcgaaaaatatatcccatattaAACTCGGTACC
GTGTGATAGCTATTACTTATTTCTTTATGTATTCATTCTACTTTAGTTTT
ACATATCGATACtatgttttctttttcgatttagattttgaataaaataa
taGACGGTTCTAATTaacttttcaatgcaatttaaTCATTTAGGCCAGGA
AAATCCATGCAACCCCGATGTTTATAATGTTTTTGATTCAACGACAATAT
TTCAACGAAGCAGTGGAAACATTGTACCTTCAAATTCAAGAAGCTTCATT
TGTGATGATGGTATAAACCATGATGTTTGGCAAAGATTTATCAGCCCAGC
TGGCAGTGAAATGCCTACAACGTGTCCACCTCAGTTCGCATGT Coding sequence (CDS) from alignment at sc0005190:2..1794+ >TCONS_00044221 ID=TCONS_00044221|Name=TCONS_00044221|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at sc0005190:2..1794+ (Clytia hemisphaerica)
AGCATTTGGTGTAGAATATTCGATTCGGAATCTGAAACTTTAATGATGGC
GAGCTTTCTATTGTGGATGACACTATGGTCAATGATGTTATCCTTATCCT
GCTTAGTAAAAGGCCAGGAAAATCCATGCAACCCCGATGTTTATAATGTT
TTTGATTCAACGACAATATTTCAACGAAGCAGTGGAAACATTGTACCTTC
AAATTCAAGAAGCTTCATTTGTGATGATGGTATAAACCATGATGTTTGGC
AAAGATTTATCAGCCCAGCTGGCAGTGAAATGCCTACAACGTGTCCACCT
CAGTTCGCATGTAGCATTTGGTGTAGAATATTCGATTCGGAATCTGAAAC
TTTAATGATGGCGAGCTTTCTATTGTGGATGACACTATGGTCAATGATGT
TATCCTTATCCTGCTTAGTAAAAGGCCAGGAAAATCCATGCAACCCCGAT
GTTTATAATGTTTTTGATTCAACGACAATATTTCAACGAAGCAGTGGAAA
CATTGTACCTTCAAATTCAAGAAGCTTCATTTGTGATGATGGTATAAACC
ATGATGTTTGGCAAAGATTTATCAGCCCAGCTGGCAGTGAAATGCCTACA
ACGTGTCCACCTCAGTTCGCATGTAGCATTTGGTGTAGAATATTCGATTC
GGAATCTGAAACTTTAATGATGGCGAGCTTTCTATTGTGGATGACACTAT
GGTCAATGATGTTATCCTTATCCTGCTTAGTAAAAGGCCAGGAAAATCCA
TGCAACCCCGATGTTTATAATGTTTTTGATTCAACGACAATATTTCAACG
AAGCAGTGGAAACATTGTACCTTCAAATTCAAGAAGCTTCATTTGTGATG
ATGGTATAAACCATGATGTTTGGCAAAGATTTATCAGCCCAGCTGGCAGT
GAAATGCCTACAACGTGTCCACCTCAGTTCGCATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044221-exon-sc0005190-1491911889:2..25 | TCONS_00044221-exon-sc0005190-1491911889:2..25 | Clytia hemisphaerica | exon |
| TCONS_00044221-exon-sc0005190-1510915933:2..25 | TCONS_00044221-exon-sc0005190-1510915933:2..25 | Clytia hemisphaerica | exon |
| TCONS_00044221-exon-sc0005190-1575043694:2..25 | TCONS_00044221-exon-sc0005190-1575043694:2..25 | Clytia hemisphaerica | exon |
| TCONS_00044221-exon-sc0005190-1491911889:379..468 | TCONS_00044221-exon-sc0005190-1491911889:379..468 | Clytia hemisphaerica | exon |
| TCONS_00044221-exon-sc0005190-1510915933:379..468 | TCONS_00044221-exon-sc0005190-1510915933:379..468 | Clytia hemisphaerica | exon |
| TCONS_00044221-exon-sc0005190-1575043694:379..468 | TCONS_00044221-exon-sc0005190-1575043694:379..468 | Clytia hemisphaerica | exon |
| TCONS_00044221-exon-sc0005190-1491911889:1595..1794 | TCONS_00044221-exon-sc0005190-1491911889:1595..1794 | Clytia hemisphaerica | exon |
| TCONS_00044221-exon-sc0005190-1510915933:1595..1794 | TCONS_00044221-exon-sc0005190-1510915933:1595..1794 | Clytia hemisphaerica | exon |
| TCONS_00044221-exon-sc0005190-1575043694:1595..1794 | TCONS_00044221-exon-sc0005190-1575043694:1595..1794 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005190 | supercontig | sc0005190:2..1794 + |
Blast
The following BLAST results are available for this feature:
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