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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044206 ID=TCONS_00044206|Name=TCONS_00044206|organism=Clytia hemisphaerica|type=transcript|length=1070bp
GTTTTGAAGAGTAAGAATCCTATGTGTGACAGTATTGTCACACAGTCCCC
AGAGTTGACTAGCATAGCGAACATGAGaagcaaaaattgcatgataaatG
TTTAAAAGGATGTgaatacaccttatcggaaattccacaaaaacaatcgc
gctaaaatggatccgttgaaattgggaggtaaacataaatggtAGTGCGA
GTAGCGGCGGTATGGCTAACAATACATGGAGTACGCTCGCGTAGTTCGGC
CCAGCTTCAACACTACATTTCCGTCACGTAAATATACTACATGAATTCTA
TGCGCTATAAAAGTTCCCACGTAAAACAAGAACTCATTTGCTTATATCTG
GCTTGTTtatgttcctaaaaatacactgaatttgaaaaaaaaaacaaaaa
aacaaagctTTTAAGATGCTAACAGAAGCtattagaaagagaaaaacaac
aacttcggtggttcttcagttgatttggcatcaatattttgggtgttttg
taaggctttttgcctgaaaaccacAATATCGagctttgtttacctcccaa
aaagtGTTGCGCGAGGATGcggaatttccgataaggtgtatttGAACATA
GTGACAAAGTTTGGatattgccccatttgcccttcTCAATGTAGCAGCAA
TGAAAGGAGTATGAACCTTCCAGTTTAGATGATTGTCATGGTGAACACCC
AAATACTTCACACTCTTACTTGGTGATAGAATTTTCCTGCAAAGCTTAAT
TCTTGGAATACAGTCCATCTGTCTCCAAGGAGAACGAAAAATTACAAACT
CAGTTTTGCTAgcatttaaagaaattttgttggcatTAAGCCAGTTGACT
AAAACTCTGAGATCAGCATTAACCCTCCCACAAAGACtccatacagtttt
tgaaaaatttagtaaatgaATCATCATCAAAATGATATGTTTCAGAGGTT
CTTATACAGCGGTGAAGATCGTTTATATACAACAAGAATAGCAGAGGACC
CAAGACTGAACCCTGAGGAACTCCAtgattaatagattttaaaagggaat
ttgaTTGATGAGCCTGCAAG Run BLAST on NCBI protein sequence of TCONS_00044206-protein >TCONS_00044206-protein ID=TCONS_00044206-protein|Name=TCONS_00044206-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MMIHLLNFSKTVWSLCGRVNADLRVLVNWLNANKISLNASKTEFVIFRSP
WRQMDCIPRIKLCRKILSPSKSVKYLGVHHDNHLNWKVHTPFIAATLRRA
NGAISKLCHYVQIHLIGNSASSRNTFWEVNKARYCGFQAKSLTKHPKY Run BLAST on NCBI transcript from alignment at sc0005156:599..1668 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044206 ID=TCONS_00044206|Name=TCONS_00044206|organism=Clytia hemisphaerica|type=transcript|length=1070bp|location=Sequence derived from alignment at sc0005156:599..1668 (Clytia hemisphaerica)
CTTGCAGGCTCATCAAtcaaattcccttttaaaatctattaatcaTGGAG
TTCCTCAGGGTTCAGTCTTGGGTCCTCTGCTATTCTTGTTGTATATAAAC
GATCTTCACCGCTGTATAAGAACCTCTGAAACATATCATTTTGATGATGA
TtcatttactaaatttttcaaaaactgtatggaGTCTTTGTGGGAGGGTT
AATGCTGATCTCAGAGTTTTAGTCAACTGGCTTAatgccaacaaaatttc
tttaaatgcTAGCAAAACTGAGTTTGTAATTTTTCGTTCTCCTTGGAGAC
AGATGGACTGTATTCCAAGAATTAAGCTTTGCAGGAAAATTCTATCACCA
AGTAAGAGTGTGAAGTATTTGGGTGTTCACCATGACAATCATCTAAACTG
GAAGGTTCATACTCCTTTCATTGCTGCTACATTGAgaagggcaaatgggg
caatatCCAAACTTTGTCACTATGTTCaaatacaccttatcggaaattcc
gCATCCTCGCGCAACactttttgggaggtaaacaaagctCGATATTgtgg
ttttcaggcaaaaagccttacaaaacacccaaaatattgatgccaaatca
actgaagaaccaccgaagttgttgtttttctctttctaataGCTTCTGTT
AGCATCTTAAAagctttgtttttttgttttttttttcaaattcagtgtat
ttttaggaacataAACAAGCCAGATATAAGCAAATGAGTTCTTGTTTTAC
GTGGGAACTTTTATAGCGCATAGAATTCATGTAGTATATTTACGTGACGG
AAATGTAGTGTTGAAGCTGGGCCGAACTACGCGAGCGTACTCCATGTATT
GTTAGCCATACCGCCGCTACTCGCACTaccatttatgtttacctcccaat
ttcaacggatccattttagcgcgattgtttttgtggaatttccgataagg
tgtattcACATCCTTTTAAACatttatcatgcaatttttgcttCTCATGT
TCGCTATGCTAGTCAACTCTGGGGACTGTGTGACAATACTGTCACACATA
GGATTCTTACTCTTCAAAAC Coding sequence (CDS) from alignment at sc0005156:599..1668 >TCONS_00044206 ID=TCONS_00044206|Name=TCONS_00044206|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at sc0005156:599..1668 (Clytia hemisphaerica)
ATGATGATtcatttactaaatttttcaaaaactgtatggaGTCTTTGTGG
GAGGGTTAATGCTGATCTCAGAGTTTTAGTCAACTGGCTTAatgccaaca
aaatttctttaaatgcTAGCAAAACTGAGTTTGTAATTTTTCGTTCTCCT
TGGAGACAGATGGACTGTATTCCAAGAATTAAGCTTTGCAGGAAAATTCT
ATCACCAAGTAAGAGTGTGAAGTATTTGGGTGTTCACCATGACAATCATC
TAAACTGGAAGGTTCATACTCCTTTCATTGCTGCTACATTGAgaagggca
aatggggcaatatCCAAACTTTGTCACTATGTTCaaatacaccttatcgg
aaattccgCATCCTCGCGCAACactttttgggaggtaaacaaagctCGAT
ATTgtggttttcaggcaaaaagccttacaaaacacccaaaatattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044206-exon-sc0005156-1491911889:599..1668 | TCONS_00044206-exon-sc0005156-1491911889:599..1668 | Clytia hemisphaerica | exon |
| TCONS_00044206-exon-sc0005156-1510915933:599..1668 | TCONS_00044206-exon-sc0005156-1510915933:599..1668 | Clytia hemisphaerica | exon |
| TCONS_00044206-exon-sc0005156-1575043694:599..1668 | TCONS_00044206-exon-sc0005156-1575043694:599..1668 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005156 | supercontig | sc0005156:599..1668 . |
Blast
The following BLAST results are available for this feature:
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