TCONS_00044199 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044199
Unique NameTCONS_00044199
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length871

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044199 ID=TCONS_00044199|Name=TCONS_00044199|organism=Clytia hemisphaerica|type=transcript|length=871bp
TGCTCCTTTTGACATCAATGACTCGGCTATTCAGCCTGACATAGAAGAGA
TGAATTTCAGTCAAacagagGATGAAGTGTCAGATTCGGAGTCAGAATCG
GAATTCGACGATGACGTCAAAGACCAGAACTACGAACCTTCTGACGAATC
TGAAGAATGCCAAAGCGACGAATATGAAAGTGATGaatattcaattcaaa
atatTAACGAGGAAAGGAATACAATTTCGGATTCATATATATTTGATGGG
TCAAATATTGAGGACGGAAGCAACGATCAAGAAATAGTTGTGAATATCCC
AAGGAGCAGAAAGACGAAGGAAGGCAAACGCATCTATGACAAGGTGCAAT
ACTGTTTGTATTGTCAAGGTGAAGTTGGCAATATAGGAAGACATCTCAGA
AGTTGCAAGAAGGCAGACAAAAGCGTAATTAAGCCGTTATTAGACCCTGA
CACGAGCAAGACAGAAAAAGACAAACTATATCTTGAGTTACGTGGACGCG
GCAATTTTTATCACAACATAAAGGTAATACAACGTTGTAGATTTACCAAG
GCGGCTACTGTGAAAAATGTTTACtttaatgtcagaaatttttgcgtcca
gaaaatttcgcgagtcagTCAGTCCATTCgtgttttaattttcgcgaaat
tagaattttttagaCAGAAACACTGGTAAAGTAAATAGGATCTCTGTCCT
AATAGTGAATTTAGTTAAACTGGTGTATAATTTTAGACCTTCCCTCCAGT
TTCACCAAAGGTGGTTGCAACACTGATTAAAGTATTTTCATTGCtatcaa
aattaagttttaatgTGTTTAGATTTCTGAAGTTTCTGAAACAGCTCATT
TCCTCAGAAAAAAGACAGGAC
Run BLAST on NCBI

protein sequence of TCONS_00044199-protein

>TCONS_00044199-protein ID=TCONS_00044199-protein|Name=TCONS_00044199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
APFDINDSAIQPDIEEMNFSQTEDEVSDSESESEFDDDVKDQNYEPSDES
EECQSDEYESDEYSIQNINEERNTISDSYIFDGSNIEDGSNDQEIVVNIP
RSRKTKEGKRIYDKVQYCLYCQGEVGNIGRHLRSCKKADKSVIKPLLDPD
TSKTEKDKLYLELRGRGNFYHNIKVIQRCRFTKAATVKNVYFNVRNFCVQ
KISRVSQSIRVLIFAKLEFFRQKHW
Run BLAST on NCBI

transcript from alignment at sc0005152:883..4681+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044199 ID=TCONS_00044199|Name=TCONS_00044199|organism=Clytia hemisphaerica|type=transcript|length=3799bp|location=Sequence derived from alignment at sc0005152:883..4681+ (Clytia hemisphaerica)
TGCTCCTTTTGACATCAATGACTCGGCTATTCAGCCTGACATAGAAGAGA
TGAATTTCAGTCAAacagaggtttgtttttttatcagtTATGGTTCCTTT
GAAACGGATTAATAATTTCTGTAAGCTTTTGAAGCAGTGCCAAATTTACC
TCAAGCCTCTGTGACGCCACAGGGCCGTTAGAAGTACTACATCGTCTTTC
AAGAGCTTTGTTATGGTACAAGTTTTTACGGGtttatttgtaatttttct
caatttttggggGTTTAAAGATTTGCCTTGGGAATGAGTAAAACGGCCGA
ATCTCGAATCTCACtccagtcctcagtttagtAGTTGGCTACTGATTTGG
GGTCGTTGCGCTTTTCCCGTGTTGGCACAATATGGTAAGTCCCTGGAATG
ATGATATGAATTAATAGGATTAAGGTATGCAGATTTTTAGCTCTAATCTA
ATTTGTAACCTACCTTTATTTCAGGATGAAGTGTCAGATTCGGAGTCAGA
ATCGGAATTCGACGATGACGTCAAAGACCAGAACTACGAACCTTCTGACG
AATCTGAAGAATGCCAAAGCGACGAATATGAAAGTGATGaatattcaatt
caaaatatTAACGAGGTAACCtaatgtacacatttttttNNNNNNNNNNN
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NNNNNNTATCTCTTATAGTGCCCTAAAATTCCATTCGTATAGGTGACCGA
ATTAaactaattttgaaattttcatttccgTTCATCAAatcattactttt
tgttttatttccaaACAAAGTTGATGTGACTTCAATTTTATAGGAAAGGA
ATACAATTTCGGATTCATATATATTTGATGGGTCAAATATTGAGGACGGA
AGCAACGATCAAGAAATAGGTAACaggcatggcgttctaaattaaTGTTA
TGGTAACGGGTCTCTTTTTTTTGAAGTGGGCAAATATTTGATGATGTCTT
TGCCCTTCTTTGAACACTAGTAAATTTATAGAGACATAATCCAAAATGCT
TACAGTAACTTTCAGGCAGCTCCAATTTTGATTAACGAATCCTTTCACGT
TGGATTTTGGGTGATGCTATagtaaaaatatgttttgtgaCTTTTTCCTA
TAGGTTGACTGCTATAAAGTACCTTTTTAGCCAGTTTATTTATTAGAAAA
TATCATGTTTTTTAGTTGTGAATATCCCAAGGAGCAGAAAGACGAAGGAA
GGCAAACGCATCTATGACAAGGTGCAATACTGTTTGTATTGTCAAGGTGA
AGTTGGCAATATAGGAAGACATCTCAGAAGTTGCAAGAAGGCAGACAAAA
GCGTAATTAAGCCGTTATTAGACCCTGACACGAGCAAGACAGAAAAAGAC
AAACTATATCTTGAGTTACGTGGACGCGGCAATTTTTATCACAACATAAA
GGTAATACAACGTTGTAGATTTACCAAGGCGGCTACTGTGAAAAATGTTT
ACtttaatgtcagaaatttttgcgtccagaaaatttcgcgagtcagTCAG
TCCATTCgtgttttaattttcgcgaaattagaattttttagaCAGAAACA
CTGGTAAAGTAAATAGGATCTCTGTCCTAATAGTGAATTTAGTTAAACTG
GTGTATAATTTTAGACCTTCCCTCCAGTTTCACCAAAGGTGGTTGCAACA
CTGATTAAAGTATTTTCATTGCtatcaaaattaagttttaatgTGTTTAG
ATTTCTGAAGTTTCTGAAACAGCTCATTTCCTCAGAAAAAAGACAGGAC

Coding sequence (CDS) from alignment at sc0005152:883..4681+

>TCONS_00044199 ID=TCONS_00044199|Name=TCONS_00044199|organism=Clytia hemisphaerica|type=CDS|length=2712bp|location=Sequence derived from alignment at sc0005152:883..4681+ (Clytia hemisphaerica)
GCTCCTTTTGACATCAATGACTCGGCTATTCAGCCTGACATAGAAGAGAT
GAATTTCAGTCAAacagagGATGAAGTGTCAGATTCGGAGTCAGAATCGG
AATTCGACGATGACGTCAAAGACCAGAACTACGAACCTTCTGACGAATCT
GAAGAATGCCAAAGCGACGAATATGAAAGTGATGaatattcaattcaaaa
tatTAACGAGGAAAGGAATACAATTTCGGATTCATATATATTTGATGGGT
CAAATATTGAGGACGGAAGCAACGATCAAGAAATAGTTGTGAATATCCCA
AGGAGCAGAAAGACGAAGGAAGGCAAACGCATCTATGACAAGGTGCAATA
CTGTTTGTATTGTCAAGGTGAAGTTGGCAATATAGGAAGACATCTCAGAA
GTTGCAAGAAGGCAGACAAAAGCGTAATTAAGCCGTTATTAGACCCTGAC
ACGAGCAAGACAGAAAAAGACAAACTATATCTTGAGTTACGTGGACGCGG
CAATTTTTATCACAACATAAAGGTAATACAACGTTGTAGATTTACCAAGG
CGGCTACTGTGAAAAATGTTTACtttaatgtcagaaatttttgcgtccag
aaaatttcgcgagtcagTCAGTCCATTCgtgttttaattttcgcgaaatt
agaattttttagaCAGAAACACTGGTAAGCTCCTTTTGACATCAATGACT
CGGCTATTCAGCCTGACATAGAAGAGATGAATTTCAGTCAAacagagGAT
GAAGTGTCAGATTCGGAGTCAGAATCGGAATTCGACGATGACGTCAAAGA
CCAGAACTACGAACCTTCTGACGAATCTGAAGAATGCCAAAGCGACGAAT
ATGAAAGTGATGaatattcaattcaaaatatTAACGAGGAAAGGAATACA
ATTTCGGATTCATATATATTTGATGGGTCAAATATTGAGGACGGAAGCAA
CGATCAAGAAATAGTTGTGAATATCCCAAGGAGCAGAAAGACGAAGGAAG
GCAAACGCATCTATGACAAGGTGCAATACTGTTTGTATTGTCAAGGTGAA
GTTGGCAATATAGGAAGACATCTCAGAAGTTGCAAGAAGGCAGACAAAAG
CGTAATTAAGCCGTTATTAGACCCTGACACGAGCAAGACAGAAAAAGACA
AACTATATCTTGAGTTACGTGGACGCGGCAATTTTTATCACAACATAAAG
GTAATACAACGTTGTAGATTTACCAAGGCGGCTACTGTGAAAAATGTTTA
CtttaatgtcagaaatttttgcgtccagaaaatttcgcgagtcagTCAGT
CCATTCgtgttttaattttcgcgaaattagaattttttagaCAGAAACAC
TGGTAAGCTCCTTTTGACATCAATGACTCGGCTATTCAGCCTGACATAGA
AGAGATGAATTTCAGTCAAacagagGATGAAGTGTCAGATTCGGAGTCAG
AATCGGAATTCGACGATGACGTCAAAGACCAGAACTACGAACCTTCTGAC
GAATCTGAAGAATGCCAAAGCGACGAATATGAAAGTGATGaatattcaat
tcaaaatatTAACGAGGAAAGGAATACAATTTCGGATTCATATATATTTG
ATGGGTCAAATATTGAGGACGGAAGCAACGATCAAGAAATAGTTGTGAAT
ATCCCAAGGAGCAGAAAGACGAAGGAAGGCAAACGCATCTATGACAAGGT
GCAATACTGTTTGTATTGTCAAGGTGAAGTTGGCAATATAGGAAGACATC
TCAGAAGTTGCAAGAAGGCAGACAAAAGCGTAATTAAGCCGTTATTAGAC
CCTGACACGAGCAAGACAGAAAAAGACAAACTATATCTTGAGTTACGTGG
ACGCGGCAATTTTTATCACAACATAAAGGTAATACAACGTTGTAGATTTA
CCAAGGCGGCTACTGTGAAAAATGTTTACtttaatgtcagaaatttttgc
gtccagaaaatttcgcgagtcagTCAGTCCATTCgtgttttaattttcgc
gaaattagaattttttagaCAGAAACACTGGTAAGCTCCTTTTGACATCA
ATGACTCGGCTATTCAGCCTGACATAGAAGAGATGAATTTCAGTCAAaca
gagGATGAAGTGTCAGATTCGGAGTCAGAATCGGAATTCGACGATGACGT
CAAAGACCAGAACTACGAACCTTCTGACGAATCTGAAGAATGCCAAAGCG
ACGAATATGAAAGTGATGaatattcaattcaaaatatTAACGAGGAAAGG
AATACAATTTCGGATTCATATATATTTGATGGGTCAAATATTGAGGACGG
AAGCAACGATCAAGAAATAGTTGTGAATATCCCAAGGAGCAGAAAGACGA
AGGAAGGCAAACGCATCTATGACAAGGTGCAATACTGTTTGTATTGTCAA
GGTGAAGTTGGCAATATAGGAAGACATCTCAGAAGTTGCAAGAAGGCAGA
CAAAAGCGTAATTAAGCCGTTATTAGACCCTGACACGAGCAAGACAGAAA
AAGACAAACTATATCTTGAGTTACGTGGACGCGGCAATTTTTATCACAAC
ATAAAGGTAATACAACGTTGTAGATTTACCAAGGCGGCTACTGTGAAAAA
TGTTTACtttaatgtcagaaatttttgcgtccagaaaatttcgcgagtca
gTCAGTCCATTCgtgttttaattttcgcgaaattagaattttttagaCAG
AAACACTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027845XLOC_027845Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044199-exon-sc0005152-1491911889:883..952TCONS_00044199-exon-sc0005152-1491911889:883..952Clytia hemisphaericaexon
TCONS_00044199-exon-sc0005152-1510915933:883..952TCONS_00044199-exon-sc0005152-1510915933:883..952Clytia hemisphaericaexon
TCONS_00044199-exon-sc0005152-1575043694:883..952TCONS_00044199-exon-sc0005152-1575043694:883..952Clytia hemisphaericaexon
TCONS_00044199-exon-sc0005152-1491911889:1357..1497TCONS_00044199-exon-sc0005152-1491911889:1357..1497Clytia hemisphaericaexon
TCONS_00044199-exon-sc0005152-1510915933:1357..1497TCONS_00044199-exon-sc0005152-1510915933:1357..1497Clytia hemisphaericaexon
TCONS_00044199-exon-sc0005152-1575043694:1357..1497TCONS_00044199-exon-sc0005152-1575043694:1357..1497Clytia hemisphaericaexon
TCONS_00044199-exon-sc0005152-1491911889:3726..3801TCONS_00044199-exon-sc0005152-1491911889:3726..3801Clytia hemisphaericaexon
TCONS_00044199-exon-sc0005152-1510915933:3726..3801TCONS_00044199-exon-sc0005152-1510915933:3726..3801Clytia hemisphaericaexon
TCONS_00044199-exon-sc0005152-1575043694:3726..3801TCONS_00044199-exon-sc0005152-1575043694:3726..3801Clytia hemisphaericaexon
TCONS_00044199-exon-sc0005152-1491911889:4098..4681TCONS_00044199-exon-sc0005152-1491911889:4098..4681Clytia hemisphaericaexon
TCONS_00044199-exon-sc0005152-1510915933:4098..4681TCONS_00044199-exon-sc0005152-1510915933:4098..4681Clytia hemisphaericaexon
TCONS_00044199-exon-sc0005152-1575043694:4098..4681TCONS_00044199-exon-sc0005152-1575043694:4098..4681Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044199-proteinTCONS_00044199-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005152supercontigsc0005152:883..4681 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.91106	0.992948	0.485435	1.00921	9.61211	9.53735	2.48042	3.09619	1.89675	4.36323	1.79176	1.89167	0.81977	1.11044	0.669486	1.04503	2.17248	1.81437	0.626661	0.238457	0.725418	1.21314	0.491578	0.614509	3.33727	3.4406	0.0734849	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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