TCONS_00044182 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044182
Unique NameTCONS_00044182
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length433

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044182 ID=TCONS_00044182|Name=TCONS_00044182|organism=Clytia hemisphaerica|type=transcript|length=433bp
aaaatggcgaagactaaagaaataccaaaaaaaatcgaaattcaacaaaa
taatgGATTCTGCACCCCTGACAACTGCTTCATGAACGAGATTGTGAAGG
ACAATGATGTGCTACAATGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATGCGAA
AGGTTTGTCCATTATGCATGCACGGAGCTACCTGCCTATCAGATACAGCT
GTGTCTCCAATACAAAAGCCGGCGCTTCGAATGTGCCAAATGTGTTACGG
TCACGCCAATTCTTCtggaaaagataaaaacaagTACAGAAAGAGTGCGT
AAGGACAAGGCAACAAATACTGATAAGGTTAATAATGGAGAGCAACAAGG
AGATAAATCTACAAACGCTCGATTGGACAGGNN
Run BLAST on NCBI

protein sequence of TCONS_00044182-protein

>TCONS_00044182-protein ID=TCONS_00044182-protein|Name=TCONS_00044182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
KMAKTKEIPKKIEIQQNNGFCTPDNCFMNEIVKDNDVLQCXXXXXXXXXX
XXXXXXXXXXXXXXDAKGLSIMHARSYLPIRYSCVSNTKAGASNVPNVLR
SRQFFWKR
Run BLAST on NCBI

transcript from alignment at sc0005125:4123..4555

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044182 ID=TCONS_00044182|Name=TCONS_00044182|organism=Clytia hemisphaerica|type=transcript|length=433bp|location=Sequence derived from alignment at sc0005125:4123..4555 (Clytia hemisphaerica)
NNCCTGTCCAATCGAGCGTTTGTAGATTTATCTCCTTGTTGCTCTCCATT
ATTAACCTTATCAGTATTTGTTGCCTTGTCCTTACGCACTCTTTCTGTAc
ttgtttttatcttttccaGAAGAATTGGCGTGACCGTAACACATTTGGCA
CATTCGAAGCGCCGGCTTTTGTATTGGAGACACAGCTGTATCTGATAGGC
AGGTAGCTCCGTGCATGCATAATGGACAAACCTTTCGCATCTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCTACATTGTAGCACATCATTGTCCTTCACAATCTCGTTC
ATGAAGCAGTTGTCAGGGGTGCAGAATCcattattttgttgaatttcgat
tttttttggtatttctttagtcttcgccatttt

Coding sequence (CDS) from alignment at sc0005125:4123..4555

>TCONS_00044182 ID=TCONS_00044182|Name=TCONS_00044182|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0005125:4123..4555 (Clytia hemisphaerica)
ttatcttttccaGAAGAATTGGCGTGACCGTAACACATTTGGCACATTCG
AAGCGCCGGCTTTTGTATTGGAGACACAGCTGTATCTGATAGGCAGGTAG
CTCCGTGCATGCATAATGGACAAACCTTTCGCATCTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCTACATTGTAGCACATCATTGTCCTTCACAATCTCGTTCATGAAG
CAGTTGTCAGGGGTGCAGAATCcattattttgttgaatttcgattttttt
tggtatttctttagtcttcgccatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027828XLOC_027828Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044182-exon-sc0005125-1491911889:4123..4555TCONS_00044182-exon-sc0005125-1491911889:4123..4555Clytia hemisphaericaexon
TCONS_00044182-exon-sc0005125-1510915933:4123..4555TCONS_00044182-exon-sc0005125-1510915933:4123..4555Clytia hemisphaericaexon
TCONS_00044182-exon-sc0005125-1575043694:4123..4555TCONS_00044182-exon-sc0005125-1575043694:4123..4555Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044182-proteinTCONS_00044182-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005125supercontigsc0005125:4123..4555 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.52738	0.995898	3.6786	2.13171	1.28153	0.675121	0.234819	1.2029	1.62172	0.721955	0.347527	1.88247	1.64034	3.94362	0.541141	0.42188	2.22355	0.853062	0.505093	0.578801	1.82739	1.53242	0	0	1.07677	0.455293	0.943984	0.770607	0.802439	0.21797
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top