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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044180 ID=TCONS_00044180|Name=TCONS_00044180|organism=Clytia hemisphaerica|type=transcript|length=574bp
cccgtaTTTTCAAAGCTAATAAATAAAAGGATAATATTAAACTTTATTTG
TTTCTTCTTTCAGACTCAAGAAAAACGAAAGACCTACGCTGAGGCAGTAA
GACATACCAAATTAGTTGAAGAACCACCATCAAACAAGGACGATACCACA
CCAACGCAAAAACTTAAAACTAGAAAACCTAACCCTCCAAAAGAATCGGA
AAAGGAAAATTGTCCACCTGAAAAAAGACCTCGCAAAGATGAAAAAGAGA
AGATAAACACTAGGAAAGTCAACACCAAGTCAAAATCAAAACTGAAGGCA
GCAAAGGCAGCACGTTCAAGAGACAGCCAAAAAGATGACAGCGGACCAGC
ACCTGAACGTGAAATGGGACCCAAAGAGGTGATGTTGTTGAACGAGTTTC
AGAAAAGGAAGGACGAAAAGATCAAGAAGGTCAATGGGTTTATGATTAAG
AGGGTTTCTTATCAGGGACTCAAAGGCAACAATCATTTGAaaccatcaaa
tttttttaatacaCCACCAACATCTCAAGATCAACACCAATCACCATCAC
CAATCAAGACAATGAATTACAAAC Run BLAST on NCBI protein sequence of TCONS_00044180-protein >TCONS_00044180-protein ID=TCONS_00044180-protein|Name=TCONS_00044180-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
PVFSKLINKRIILNFICFFFQTQEKRKTYAEAVRHTKLVEEPPSNKDDTT
PTQKLKTRKPNPPKESEKENCPPEKRPRKDEKEKINTRKVNTKSKSKLKA
AKAARSRDSQKDDSGPAPEREMGPKEVMLLNEFQKRKDEKIKKVNGFMIK
RVSYQGLKGNNHLKPSNFFNTPPTSQDQHQSPSPIKTMNYK Run BLAST on NCBI transcript from alignment at sc0005120:1645..3330+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044180 ID=TCONS_00044180|Name=TCONS_00044180|organism=Clytia hemisphaerica|type=transcript|length=1686bp|location=Sequence derived from alignment at sc0005120:1645..3330+ (Clytia hemisphaerica)
cccgtaTTTTCAAAGCTAATAAATAAAAGGATAATATTAAACTTTATTTG
TTTCTTCTTTCAGACTCAAGAAAAACGAAAGACCTACGCTGAGGCAGTAA
GACATACCAAATTAGTTGAAGAACCACCATCAAACAAGGACGATACCACA
CCAACGCAAAAACTTAAAACTAGAAAACCTAACCCTCCAAAAGAATCGGA
AAAGGAAAATTGTCCACCTGAAAAAAGAGTAAGAGCACTTACTTTATATA
TTGTTTAACTGCTTTGGATTCTAGATATTTTGAAGATATAACATGGTTTC
ATCTTGGTTGGTACATGGATACttcctaaaaaattaaattattaaattaN
CGAAAAAAGAGTAAGAGCACTTACTTTATATATTGTTTAACTGCTTTGGA
TTCTAGATATTTTGAAGATATAACATGGTTTCATCTTGGTTGGTACATGG
ATACttcctaaaaaattaaattattaaattagaTAACTTTCACAAGATGC
CatattcgcgaaaataaatcaaccacaaaattttttaattgcaTTTTCGG
GGGAGAAACCATTCCAAAGTTTTAATTTGTGGCAAAAATGGCTATTTCAC
AACTATTTTCAGGCTTATCCAAAGGATTAAATCCACGCAAAAAATTTTCA
CACAAACTTTGACTCCTGAAATTAAATCCAGAAAATTTAAACCGATTAAA
GTAAAACAATTTATGTAATATATTTGCTGGACAATGCAACCAGAAAATTT
TAATCTTTTACCTAATTGATAACCTGATCAATATTCAAAATATTTTGTAG
AGAATGAGAACTTACAATTTATCTTGGATTGATCGCAAAAATGGGAGTTA
ATTTCTGCAATATTTTCGATTTATTTCTTAAACATCAGCCATGACTTTCC
TGAGAAGAGAGAAATGAGAAGATAAGCCAACAGCTCCAGGAAAGGAAATT
GTGTTTTAAATAGTTATCTTTATTTCAGCCTCGCAAAGATGAAAAAGAGA
AGATAAACACTAGGAAAGTCAACACCAAGTCAAAATCAAAACTGAAGGCA
GCAAAGGCAGCACGTTCAAGAGACAGCCAAAAAGATGACAGCGGACCAGC
ACCTGTAAGAAATACTCTTACTTTTGAAATGTTTGAATGAAAGTCTTCTA
AGATGTTCTTAATACCACCAAAAGCAGATTTCTAAAACAGAAATTTCTGT
ACTCGGAGAAGACAACCAATTAGACATTATCTTTGATCTTTGATTTATTG
ATTTGATACGCACTGCAATGCTCTTGATACGATACCACCATTTTCCTGCG
AAACTGTAATGAAAGAATTTAACAAGTATTAGTTGCAATTTTTTAAATGA
AACAAAAATAAAAAAAACATTTTTATATTTTGATCTGTAAAAGTTTCTGC
TTGAGAAGGGTTCTATGTCTAAAGTACTTCCTTTAAGATATGAAAATTTT
AACCATCTATTTTCAGGAACGTGAAATGGGACCCAAAGAGGTGATGTTGT
TGAACGAGTTTCAGAAAAGGAAGGACGAAAAGATCAAGAAGGTCAATGGG
TTTATGATTAAGAGGGTTTCTTATCAGGGACTCAAAGGCAACAATCATTT
GAaaccatcaaatttttttaatacaCCACCAACATCTCAAGATCAACACC
AATCACCATCACCAATCAAGACAATGAATTACAAAC Coding sequence (CDS) from alignment at sc0005120:1645..3330+ >TCONS_00044180 ID=TCONS_00044180|Name=TCONS_00044180|organism=Clytia hemisphaerica|type=CDS|length=1719bp|location=Sequence derived from alignment at sc0005120:1645..3330+ (Clytia hemisphaerica)
cccgtaTTTTCAAAGCTAATAAATAAAAGGATAATATTAAACTTTATTTG
TTTCTTCTTTCAGACTCAAGAAAAACGAAAGACCTACGCTGAGGCAGTAA
GACATACCAAATTAGTTGAAGAACCACCATCAAACAAGGACGATACCACA
CCAACGCAAAAACTTAAAACTAGAAAACCTAACCCTCCAAAAGAATCGGA
AAAGGAAAATTGTCCACCTGAAAAAAGACCTCGCAAAGATGAAAAAGAGA
AGATAAACACTAGGAAAGTCAACACCAAGTCAAAATCAAAACTGAAGGCA
GCAAAGGCAGCACGTTCAAGAGACAGCCAAAAAGATGACAGCGGACCAGC
ACCTGAACGTGAAATGGGACCCAAAGAGGTGATGTTGTTGAACGAGTTTC
AGAAAAGGAAGGACGAAAAGATCAAGAAGGTCAATGGGTTTATGATTAAG
AGGGTTTCTTATCAGGGACTCAAAGGCAACAATCATTTGAaaccatcaaa
tttttttaatacaCCACCAACATCTCAAGATCAACACCAATCACCATCAC
CAATCAAGACAATGAATTACAAAcccgtaTTTTCAAAGCTAATAAATAAA
AGGATAATATTAAACTTTATTTGTTTCTTCTTTCAGACTCAAGAAAAACG
AAAGACCTACGCTGAGGCAGTAAGACATACCAAATTAGTTGAAGAACCAC
CATCAAACAAGGACGATACCACACCAACGCAAAAACTTAAAACTAGAAAA
CCTAACCCTCCAAAAGAATCGGAAAAGGAAAATTGTCCACCTGAAAAAAG
ACCTCGCAAAGATGAAAAAGAGAAGATAAACACTAGGAAAGTCAACACCA
AGTCAAAATCAAAACTGAAGGCAGCAAAGGCAGCACGTTCAAGAGACAGC
CAAAAAGATGACAGCGGACCAGCACCTGAACGTGAAATGGGACCCAAAGA
GGTGATGTTGTTGAACGAGTTTCAGAAAAGGAAGGACGAAAAGATCAAGA
AGGTCAATGGGTTTATGATTAAGAGGGTTTCTTATCAGGGACTCAAAGGC
AACAATCATTTGAaaccatcaaatttttttaatacaCCACCAACATCTCA
AGATCAACACCAATCACCATCACCAATCAAGACAATGAATTACAAAcccg
taTTTTCAAAGCTAATAAATAAAAGGATAATATTAAACTTTATTTGTTTC
TTCTTTCAGACTCAAGAAAAACGAAAGACCTACGCTGAGGCAGTAAGACA
TACCAAATTAGTTGAAGAACCACCATCAAACAAGGACGATACCACACCAA
CGCAAAAACTTAAAACTAGAAAACCTAACCCTCCAAAAGAATCGGAAAAG
GAAAATTGTCCACCTGAAAAAAGACCTCGCAAAGATGAAAAAGAGAAGAT
AAACACTAGGAAAGTCAACACCAAGTCAAAATCAAAACTGAAGGCAGCAA
AGGCAGCACGTTCAAGAGACAGCCAAAAAGATGACAGCGGACCAGCACCT
GAACGTGAAATGGGACCCAAAGAGGTGATGTTGTTGAACGAGTTTCAGAA
AAGGAAGGACGAAAAGATCAAGAAGGTCAATGGGTTTATGATTAAGAGGG
TTTCTTATCAGGGACTCAAAGGCAACAATCATTTGAaaccatcaaatttt
tttaatacaCCACCAACATCTCAAGATCAACACCAATCACCATCACCAAT
CAAGACAATGAATTACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044180-exon-sc0005120-1491911889:1645..1872 | TCONS_00044180-exon-sc0005120-1491911889:1645..1872 | Clytia hemisphaerica | exon |
| TCONS_00044180-exon-sc0005120-1510915933:1645..1872 | TCONS_00044180-exon-sc0005120-1510915933:1645..1872 | Clytia hemisphaerica | exon |
| TCONS_00044180-exon-sc0005120-1575043694:1645..1872 | TCONS_00044180-exon-sc0005120-1575043694:1645..1872 | Clytia hemisphaerica | exon |
| TCONS_00044180-exon-sc0005120-1491911889:2623..2748 | TCONS_00044180-exon-sc0005120-1491911889:2623..2748 | Clytia hemisphaerica | exon |
| TCONS_00044180-exon-sc0005120-1510915933:2623..2748 | TCONS_00044180-exon-sc0005120-1510915933:2623..2748 | Clytia hemisphaerica | exon |
| TCONS_00044180-exon-sc0005120-1575043694:2623..2748 | TCONS_00044180-exon-sc0005120-1575043694:2623..2748 | Clytia hemisphaerica | exon |
| TCONS_00044180-exon-sc0005120-1491911889:3111..3330 | TCONS_00044180-exon-sc0005120-1491911889:3111..3330 | Clytia hemisphaerica | exon |
| TCONS_00044180-exon-sc0005120-1510915933:3111..3330 | TCONS_00044180-exon-sc0005120-1510915933:3111..3330 | Clytia hemisphaerica | exon |
| TCONS_00044180-exon-sc0005120-1575043694:3111..3330 | TCONS_00044180-exon-sc0005120-1575043694:3111..3330 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005120 | supercontig | sc0005120:1645..3330 + |
Blast
The following BLAST results are available for this feature:
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